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Selection summary: 17 segments, 17 strains, 10 species, 7 genera

Available tables

Row Organism Click to show species Sub-strain Taxgroup Segment Click to show segment Purine Stretches Pyr/Pur Stretches Size(bp) %AT Reference       1 Anabaena nostoc Strain: PCC7120 BCyano NN Cyanobacteria Nostocales NCBI: Tax 103690 Main cir 1.41% 0.58% 6,413,771 bp 58.7% DNA Res. 2001 Oct 31;8(5):205-13,  8(5):205-13; 227-53 2001 Oct 31 [Abstract] | [PubMed] | [NCBI Entrez] 2 Anabaena variabilis Strain: ATCC29413 BCyano NN Cyanobacteria Nostocales NCBI: Tax 240292 Main cir 1.40% 0.60% 6,365,727 bp 58.6% Unpublished [NCBI Entrez] 3 Cyanobacteria bacterium Strain: YellowstoneA BCyano CS Cyanobacteria Chroococcales NCBI: Tax 321327 Main cir 2.33% 0.41% 2,932,766 bp 39.8% Appl Environ Microbiol. 2006 Jan,  72(1):544-50 2006 Jan [Abstract] | [PubMed] 4 Cyanobacteria bacterium Strain: YellowstoneB BCyano CS Cyanobacteria Chroococcales NCBI: Tax 321332 Main cir 2.18% 0.38% 3,046,682 bp 41.6% Appl Environ Microbiol. 2006 Jan,  72(1):544-50 2006 Jan [Abstract] | [PubMed] 5 Gloeobacter violaceus Strain: PCC7421 BCyano GG Cyanobacteria Gloeobacteria NCBI: Tax 251221 Main cir 0.66% 0.83% 4,659,019 bp 38.0% DNA Res. 2003 Aug 31,  10(4):137-45 2003 Aug 31 [Abstract] | [PubMed] | [NCBI Entrez] 6 Prochlorococcus marinus Strain: MED4 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 59919 Main cir 3.36% 0.29% 1,657,990 bp 69.2% Nature. 2003 Aug 28,  424(6952):1042-7. Epub 2003 Aug 13 2003 Aug 28 [Abstract] | [PubMed] | [NCBI Entrez] 7 Prochlorococcus marinus Strain: MIT9312 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 74546 Main cir 3.32% 0.22% 1,709,204 bp 68.8% Unpublished [NCBI Entrez] 8 Prochlorococcus marinus Strain: MIT9313 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 74547 Main cir 1.38% 0.74% 2,410,873 bp 49.3% Nature. 2003 Aug 28,  424(6952):1042-7. Epub 2003 Aug 13 2003 Aug 28 [Abstract] | [PubMed] | [NCBI Entrez] 9 Prochlorococcus marinus Strain: NATL2A BCyano PP Cyanobacteria Prochlorales NCBI: Tax 59920 Main cir 3.10% 0.34% 1,842,899 bp 64.9% Unpublished [NCBI Entrez] 10 Prochlorococcus marinus Strain: SS120 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 167539 Main cir 2.82% 0.36% 1,751,080 bp 63.6% Proc Natl Acad Sci U S A. 2003 Aug 19,  100(17):10020-5. Epub 2003 Aug 13 2003 Aug 19 [Abstract] | [PubMed] | [NCBI Entrez] 11 Synechococcus elongatus Strain: PCC6301 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 269084 Main cir 0.79% 0.91% 2,696,255 bp 44.5% Unpublished [NCBI Entrez] 12 Synechococcus elongatus Strain: PCC7942 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 1140 Main cir 0.79% 0.91% 2,695,903 bp 44.5% Unpublished [NCBI Entrez] 13 Synechococcus sp Strain: WH8102 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 84588 Main cir 1.00% 1.02% 2,434,428 bp 40.6% Nature. 2003 Aug 28,  424(6952):1037-42. Epub 2003 Aug 13 2003 Aug 28 [Abstract] | [PubMed] | [NCBI Entrez] 14 Synechococcus species Strain: CC9605 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 110662 Main cir 1.10% 0.93% 2,510,659 bp 40.8% Unpublished [NCBI Entrez] 15 Synechococcus species Strain: CC9902 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 316279 Main cir 1.20% 0.83% 2,234,828 bp 45.8% Unpublished [NCBI Entrez] 16 Synechocystis species Strain: PCC6803 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 1148 Main cir 2.32% 0.38% 3,573,470 bp 52.3% DNA Res. 1995 Aug 31,  2(4):153-66, 191-8 1995 Aug 31 [Abstract] | [PubMed] | [NCBI Entrez] 17 Thermosynechococcus elongatus Strain: BP1 BCyano CT Cyanobacteria Chroococcales NCBI: Tax 197221 Main cir 1.55% 0.57% 2,593,857 bp 46.1% Unpublished [NCBI Entrez]

REFERENCES

• David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans-Henrik Stærfeldt, Peder Worning, and Anders Krogh (2002). Bias of Purine Stretches in Sequenced Genomes Computers in Chemistry 26:531-541 PDF | Pubmed
• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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