[login]

Selection summary: 17 segments, 17 strains, 10 species, 7 genera

Available tables

Row Organism Click to show species Sub-strain Taxgroup Segment Click to show segment Size(bp) %AT %Global Direct repeats %Global Inverted repeats %Local Direct repeats %Local Inverted repeats %Local Mirror repeats %Local Everted repeats %SR Reference       1 Anabaena nostoc Strain: PCC7120 BCyano NN Cyanobacteria Nostocales NCBI: Tax 103690 Main cir 6,413,771 bp 58.7% 5.30% 3.10% 5.30% 4.20% 3.20% 2.50% 0.70% DNA Res. 2001 Oct 31;8(5):205-13,  8(5):205-13; 227-53 2001 Oct 31 [Abstract] | [PubMed] | [NCBI Entrez] 2 Anabaena variabilis Strain: ATCC29413 BCyano NN Cyanobacteria Nostocales NCBI: Tax 240292 Main cir 6,365,727 bp 58.6% 5.60% 4.30% 5.40% 4.50% 3.20% 2.60% 0.70% Unpublished [NCBI Entrez] 3 Cyanobacteria bacterium Strain: YellowstoneA BCyano CS Cyanobacteria Chroococcales NCBI: Tax 321327 Main cir 2,932,766 bp 39.8% 6.80% 6.60% 6.40% 3.00% 3.00% 2.30% 0.40% Appl Environ Microbiol. 2006 Jan,  72(1):544-50 2006 Jan [Abstract] | [PubMed] 4 Cyanobacteria bacterium Strain: YellowstoneB BCyano CS Cyanobacteria Chroococcales NCBI: Tax 321332 Main cir 3,046,682 bp 41.6% 5.30% 5.10% 5.60% 2.20% 2.50% 1.90% 0.50% Appl Environ Microbiol. 2006 Jan,  72(1):544-50 2006 Jan [Abstract] | [PubMed] 5 Gloeobacter violaceus Strain: PCC7421 BCyano GG Cyanobacteria Gloeobacteria NCBI: Tax 251221 Main cir 4,659,019 bp 38.0% 4.10% 2.80% 6.70% 4.40% 4.00% 3.40% 0.50% DNA Res. 2003 Aug 31,  10(4):137-45 2003 Aug 31 [Abstract] | [PubMed] | [NCBI Entrez] 6 Prochlorococcus marinus Strain: MED4 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 59919 Main cir 1,657,990 bp 69.2% 0.80% 0.30% 11.50% 9.00% 10.30% 7.80% 0.60% Nature. 2003 Aug 28,  424(6952):1042-7. Epub 2003 Aug 13 2003 Aug 28 [Abstract] | [PubMed] | [NCBI Entrez] 7 Prochlorococcus marinus Strain: MIT9312 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 74546 Main cir 1,709,204 bp 68.8% 0.90% 0.20% 10.90% 8.60% 9.60% 7.50% 0.60% Unpublished [NCBI Entrez] 8 Prochlorococcus marinus Strain: MIT9313 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 74547 Main cir 2,410,873 bp 49.3% 2.80% 2.10% 3.80% 2.70% 2.10% 1.40% 0.30% Nature. 2003 Aug 28,  424(6952):1042-7. Epub 2003 Aug 13 2003 Aug 28 [Abstract] | [PubMed] | [NCBI Entrez] 9 Prochlorococcus marinus Strain: NATL2A BCyano PP Cyanobacteria Prochlorales NCBI: Tax 59920 Main cir 1,842,899 bp 64.9% 2.70% 1.50% 7.40% 5.60% 5.80% 4.20% 0.40% Unpublished [NCBI Entrez] 10 Prochlorococcus marinus Strain: SS120 BCyano PP Cyanobacteria Prochlorales NCBI: Tax 167539 Main cir 1,751,080 bp 63.6% 0.70% 0.30% 6.00% 4.50% 4.40% 3.30% 0.40% Proc Natl Acad Sci U S A. 2003 Aug 19,  100(17):10020-5. Epub 2003 Aug 13 2003 Aug 19 [Abstract] | [PubMed] | [NCBI Entrez] 11 Synechococcus elongatus Strain: PCC6301 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 269084 Main cir 2,696,255 bp 44.5% 0.80% 0.90% 4.20% 2.50% 2.30% 1.90% 0.30% Unpublished [NCBI Entrez] 12 Synechococcus elongatus Strain: PCC7942 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 1140 Main cir 2,695,903 bp 44.5% 0.70% 0.90% 4.20% 2.50% 2.30% 1.90% 0.30% Unpublished [NCBI Entrez] 13 Synechococcus sp Strain: WH8102 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 84588 Main cir 2,434,428 bp 40.6% 3.20% 0.80% 5.90% 3.80% 2.80% 2.30% 0.40% Nature. 2003 Aug 28,  424(6952):1037-42. Epub 2003 Aug 13 2003 Aug 28 [Abstract] | [PubMed] | [NCBI Entrez] 14 Synechococcus species Strain: CC9605 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 110662 Main cir 2,510,659 bp 40.8% 2.20% 1.90% 5.60% 3.80% 2.80% 2.20% 0.40% Unpublished [NCBI Entrez] 15 Synechococcus species Strain: CC9902 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 316279 Main cir 2,234,828 bp 45.8% 0.70% 1.00% 3.70% 2.90% 2.20% 1.70% 0.30% Unpublished [NCBI Entrez] 16 Synechocystis species Strain: PCC6803 BCyano CS Cyanobacteria Chroococcales NCBI: Tax 1148 Main cir 3,573,470 bp 52.3% 3.00% 2.80% 4.10% 1.80% 2.60% 1.90% 0.30% DNA Res. 1995 Aug 31,  2(4):153-66, 191-8 1995 Aug 31 [Abstract] | [PubMed] | [NCBI Entrez] 17 Thermosynechococcus elongatus Strain: BP1 BCyano CT Cyanobacteria Chroococcales NCBI: Tax 197221 Main cir 2,593,857 bp 46.1% 5.70% 4.60% 3.80% 1.50% 2.00% 1.60% 0.30% Unpublished [NCBI Entrez]

REFERENCES

• Jensen LJ, Friis C, Ussery DW (1999). Three views of microbial genomes Res Microbiol 150:773-777 PDF | Pubmed
• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

CORRESPONDENCE: