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Selection summary: 8 segments, 6 strains, 5 species, 3 genera

Available tables

Row Organism Click to show species Sub-strain Taxgroup Segment Click to show segment Purine Stretches Pyr/Pur Stretches Size(bp) %AT Reference       1 Borrelia burgdorferi Strain: B31 BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 224326 Main lin 3.50% 0.26% 910,724 bp 71.4% Nature. 1997 Dec 11,  390(6660):580-6 1997 Dec 11 [Abstract] | [PubMed] | [NCBI Entrez] 2 Borrelia garinii Strain: PBi BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 290434 Main lin 3.48% 0.25% 904,246 bp 71.7% Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez] 3 Leptospira interrogans Strain: 56601 BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 189518 Chr 1 cir 4.06% 0.18% 4,332,241 bp 65.0% Nature. 2003 Apr 24,  422(6934):888-93 2003 Apr 24 [Abstract] | [PubMed] | [NCBI Entrez] BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 189518 Chr 2 cir 4.25% 0.17% 358,943 bp 64.9% Nature. 2003 Apr 24,  422(6934):888-93 2003 Apr 24 [Abstract] | [PubMed] | [NCBI Entrez] 4 Leptospira interrogans Strain: FiocruzL1130 BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 267671 Chr 1 cir 4.05% 0.18% 4,277,185 bp 65.0% J Bacteriol. 2004 Apr,  186(7):2164-72 2004 Apr [Abstract] | [PubMed] | [NCBI Entrez] BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 267671 Chr 2 cir 4.23% 0.17% 350,181 bp 65.0% J Bacteriol. 2004 Apr,  186(7):2164-72 2004 Apr [Abstract] | [PubMed] | [NCBI Entrez] 5 Treponema denticola Strain: ATCC35405 BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 243275 Main cir 3.84% 0.31% 2,843,201 bp 62.1% Proc Natl Acad Sci U S A. 2004 Apr 13,  101(15):5646-51. Epub 2004 Apr 2 2004 Apr 13 [Abstract] | [PubMed] | [NCBI Entrez] 6 Treponema pallidum Strain: Nichols BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 243276 Main cir 3.06% 2.02% 1,138,011 bp 47.2% Science. 1998 Jul 17,  281(5375):375-88 1998 Jul 17 [Abstract] | [PubMed] | [NCBI Entrez]

REFERENCES

• David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans-Henrik Stærfeldt, Peder Worning, and Anders Krogh (2002). Bias of Purine Stretches in Sequenced Genomes Computers in Chemistry 26:531-541 PDF | Pubmed
• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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