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Selection summary: 5 segments, 4 strains, 3 species, 2 genera  Close the kingdom view of Bacteria and return to index
Available tables

Gene Prediction

Genome Atlas Database - BACTERIA

Acidobacteria Actinobacteria Aquificae
Bacteroidetes/Chlorobi Chlamydiae/Verrucomicrobia Chloroflexi
Cyanobacteria Deinococcus-Thermus Firmicutes
Fusobacteria Planctomycetes Proteobacteria
Spirochaetes Thermotogae unclassified
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RowOrganism
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Sub-strain
Segment
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LinksSize(bp)
%AT
EasyGene PredictionsGlimmer2 PredictionsGeneMark PredictionsAnnotation according
to accession
Reference

       
1Thermus thermophilus
Strain: HB8
Main
cir
CBS Download
NCBI Entrez
1,849,742 bp30.5%N/A0 ORFs
ORFs | Proteins
Glimmer2 PTT file
0 ORFs
ORFs | Proteins
 GeneMark PTT file
1,973 genes ORFs
ORFs | Proteins
Unpublished

[NCBI Entrez]
2Thermus thermophilus
Strain: HB27
Main
cir
CBS Download
NCBI Entrez
1,894,877 bp30.6%N/AN/AN/A1,982 genes ORFs
ORFs | Proteins
Nat Biotechnol. 2004 May22(5):547-53. Epub 2004 Apr 4
2004 May
[Abstract] | [PubMed] | [NCBI Entrez]
3Deinococcus radiodurans
Strain: R1
Chr 2
cir
CBS Download
NCBI Entrez
412,348 bp33.3%391 ORFs
ORFs | Proteins
 EasyGene GFF file
354 ORFs
ORFs | Proteins
Glimmer2 PTT file
386 ORFs
ORFs | Proteins
 GeneMark PTT file
357 genes ORFs
ORFs | Proteins
Science. 1999 Nov 19286(5444):1571-7
1999 Nov 19
[Abstract] | [PubMed] | [NCBI Entrez]
Chr 1
cir
CBS Download
NCBI Entrez
2,648,638 bp33.0%2733 ORFs
ORFs | Proteins
 EasyGene GFF file
2500 ORFs
ORFs | Proteins
Glimmer2 PTT file
2671 ORFs
ORFs | Proteins
 GeneMark PTT file
2,579 genes ORFs
ORFs | Proteins
Science. 1999 Nov 19286(5444):1571-7
1999 Nov 19
[Abstract] | [PubMed] | [NCBI Entrez]
4Deinococcus geothermalis
Strain: DSM11300
DSM11300
Main
cir
CBS Download2,467,205 bp33.4%N/AN/AN/A2,335 genes ORFs
ORFs | Proteins
Unpublished



CORRESPONDENCE:

Scientific questions: David W. Ussery       Peter Fischer Hallin