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Selection summary: 8 segments, 6 strains, 5 species, 3 genera

Available tables

Row Organism Click to show species Sub-strain Taxgroup Segment Click to show segment Size(bp) %AT %Global Direct repeats %Global Inverted repeats %Local Direct repeats %Local Inverted repeats %Local Mirror repeats %Local Everted repeats %SR Reference       1 Treponema pallidum Strain: Nichols BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 243276 Main cir 1,138,011 bp 47.2% 2.30% 0.60% 3.50% 2.20% 2.90% 1.50% 0.20% Science. 1998 Jul 17,  281(5375):375-88 1998 Jul 17 [Abstract] | [PubMed] | [NCBI Entrez] 2 Treponema denticola Strain: ATCC35405 BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 243275 Main cir 2,843,201 bp 62.1% 5.10% 2.50% 7.90% 6.10% 6.20% 4.60% 0.40% Proc Natl Acad Sci U S A. 2004 Apr 13,  101(15):5646-51. Epub 2004 Apr 2 2004 Apr 13 [Abstract] | [PubMed] | [NCBI Entrez] 3 Leptospira interrogans Strain: FiocruzL1130 BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 267671 Chr 2 cir 350,181 bp 65.0% 2.70% 2.50% 8.40% 7.20% 6.90% 5.50% 0.30% J Bacteriol. 2004 Apr,  186(7):2164-72 2004 Apr [Abstract] | [PubMed] | [NCBI Entrez] BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 267671 Chr 1 cir 4,277,185 bp 65.0% 8.80% 7.60% 9.40% 7.80% 6.80% 5.50% 0.30% J Bacteriol. 2004 Apr,  186(7):2164-72 2004 Apr [Abstract] | [PubMed] | [NCBI Entrez] 4 Leptospira interrogans Strain: 56601 BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 189518 Chr 2 cir 358,943 bp 64.9% 4.20% 4.80% 8.10% 7.20% 6.70% 5.40% 0.30% Nature. 2003 Apr 24,  422(6934):888-93 2003 Apr 24 [Abstract] | [PubMed] | [NCBI Entrez] BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 189518 Chr 1 cir 4,332,241 bp 65.0% 9.50% 8.20% 9.40% 7.80% 6.80% 5.50% 0.30% Nature. 2003 Apr 24,  422(6934):888-93 2003 Apr 24 [Abstract] | [PubMed] | [NCBI Entrez] 5 Borrelia garinii Strain: PBi BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 290434 Main lin 904,246 bp 71.7% 1.50% 0.00% 17.00% 10.90% 15.10% 9.20% 0.90% Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez] 6 Borrelia burgdorferi Strain: B31 BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 224326 Main lin 910,724 bp 71.4% 1.10% 0.00% 16.80% 10.80% 14.70% 8.80% 0.90% Nature. 1997 Dec 11,  390(6660):580-6 1997 Dec 11 [Abstract] | [PubMed] | [NCBI Entrez]

REFERENCES

• Jensen LJ, Friis C, Ussery DW (1999). Three views of microbial genomes Res Microbiol 150:773-777 PDF | Pubmed
• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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