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Selection summary: 28 segments, 27 strains, 27 species, 20 genera

Available tables

Row Organism Click to show species Sub-strain Segment Click to show segment Taxgroup Size(bp) Predicted Origin Terminus Signal-to-noise Amplitude GC skew AT skew Purine skew Keto skew Over- represented Oligos Atlas dnaE E. coli Homolog Score|Evalue dnaQ E. coli Homolog Score|Evalue dnaE S. PCC6803 Homolog Score|Evalue polC B. subtillis Homolog Score|Evalue Reference           1 Aeropyrum pernix Strain: K1 Main cir ACTD Crenarchaeota Thermoprotei NCBI: Tax 272557 1,669,695 bp 445 kbp 966 kbp 0.5614 52,845 2.13% 0.03% 1.21% 1.19% Show Oligos Base Atlas N/A N/A N/A N/A DNA Res. 1999 Apr 30,  6(2):83-101, 145-52 1999 Apr 30 [Abstract] | [PubMed] | [NCBI Entrez] 2 Archaeoglobus fulgidus Strain: DSM4304 Main cir AEAA Euryarchaeota Archaeoglobi NCBI: Tax 224325 2,178,400 bp 1,682 kbp 539 kbp 0.2395 23,655 0.61% 0.88% 0.75% ‑0.16% Show Oligos Base Atlas N/A Show report 63.93 | 4.6e‑12 N/A N/A Nature. 1997 Nov 27,  390(6658):364-70 1997 Nov 27 [Abstract] | [PubMed] | [NCBI Entrez] 3 Haloarcula marismortui Strain: ATCC43049 Chr 1 cir AEHH Euryarchaeota Halobacteria NCBI: Tax 272569 3,131,724 bp 1,471 kbp 2,412 kbp 0.4194 41,066 0.41% 0.77% 0.55% ‑0.03% Show Oligos Base Atlas N/A N/A N/A N/A Genome Res. 2004 Nov,  14(11):2221-34 2004 Nov [Abstract] | [PubMed] | [NCBI Entrez] Chr 2 cir AEHH Euryarchaeota Halobacteria NCBI: Tax 272569 288,050 bp 231 kbp 124 kbp 0.1659 8,015 0.72% ‑0.47% 0.21% 0.61% Show Oligos Base Atlas N/A N/A N/A N/A Genome Res. 2004 Nov,  14(11):2221-34 2004 Nov [Abstract] | [PubMed] | [NCBI Entrez] 4 Halobacterium species Strain: NRC1 Main cir AEHH Euryarchaeota Halobacteria NCBI: Tax 64091 2,014,239 bp 1,124 kbp 1,806 kbp 5.8513 449,217 4.40% ‑0.09% 2.96% 3.01% Show Oligos Base Atlas N/A N/A N/A N/A Proc Natl Acad Sci U S A. 2000 Oct 24,  97(22):12176-81 2000 Oct 24 [Abstract] | [PubMed] | [NCBI Entrez] 5 Methanobacterium thermoautotrophicum Strain: delta-H Main cir AEMMb Euryarchaeota Methanobacteria NCBI: Tax 187420 1,751,377 bp 1,292 kbp 404 kbp 0.9798 103,590 2.42% 1.33% 1.87% 0.53% Show Oligos Base Atlas N/A N/A N/A N/A J Bacteriol. 1997 Nov,  179(22):7135-55 1997 Nov [Abstract] | [PubMed] | [NCBI Entrez] 6 Methanocaldococcus jannaschii Strain: DSM2661 Main cir AEMMc Euryarchaeota Methanococci NCBI: Tax 243232 1,664,970 bp 929 kbp 1,648 kbp 0.8160 63,018 2.74% 1.42% 1.84% ‑0.12% Show Oligos Base Atlas N/A N/A N/A N/A Science. 1996 Aug 23,  273(5278):1058-73 1996 Aug 23 [Abstract] | [PubMed] | [NCBI Entrez] 7 Methanococcoides burtonii Strain: DSM6242 Main cir AEMM Euryarchaeota Methanomicrobia NCBI: Tax 259564 2,575,032 bp 1,835 kbp 55 kbp 4.5813 474,308 1.78% ‑3.52% ‑1.36% 2.81% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished 8 Methanococcus maripaludis Strain: S2 Main cir AEMMc Euryarchaeota Methanococci NCBI: Tax 267377 1,661,137 bp 48 kbp 905 kbp 1.0425 95,866 1.91% ‑1.48% ‑0.36% 1.62% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished [NCBI Entrez] 9 Methanopyrus kandleri Strain: AV19 Main cir AEMM Euryarchaeota Methanopyri NCBI: Tax 190192 1,694,969 bp 492 kbp 1,211 kbp 0.3607 31,851 0.95% ‑0.30% 0.46% 0.70% Show Oligos Base Atlas N/A N/A N/A N/A Proc Natl Acad Sci U S A. 2002 Apr 2,  99(7):4644-9 2002 Apr 2 [Abstract] | [PubMed] | [NCBI Entrez] 10 Methanosarcina acetivorans Strain: C2A Main cir AEMM Euryarchaeota Methanomicrobia NCBI: Tax 188937 5,751,492 bp 5,749 kbp 3,739 kbp 2.0429 256,981 0.20% ‑2.58% ‑1.39% 1.57% Show Oligos Base Atlas N/A N/A N/A N/A Genome Res. 2002 Apr,  12(4):532-42 2002 Apr [Abstract] | [PubMed] | [NCBI Entrez] 11 Methanosarcina barkeri Strain: fusaro Chr 1 cir AEMM Euryarchaeota Methanomicrobia NCBI: Tax 269797 4,837,408 bp 1,193 kbp 4,243 kbp 0.3519 44,293 0.47% ‑0.79% ‑0.29% 0.67% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished [NCBI Entrez] 12 Methanosarcina mazei Strain: Goe1 Main cir AEMM Euryarchaeota Methanomicrobia NCBI: Tax 192952 4,096,345 bp 1,573 kbp 94 kbp 2.3679 269,148 ‑0.28% ‑2.85% ‑1.78% 1.55% Show Oligos Base Atlas N/A N/A N/A N/A J Mol Microbiol Biotechnol. 2002 Jul,  4(4):453-61 2002 Jul [Abstract] | [PubMed] | [NCBI Entrez] 13 Methanosphaera stadtmanae Strain: DSM3091 Main cir AEMMb Euryarchaeota Methanobacteria NCBI: Tax 339860 1,767,403 bp 32 kbp 874 kbp 2.1271 153,560 4.53% 0.67% 1.73% 0.77% Show Oligos Base Atlas N/A N/A N/A N/A J Bacteriol. 2006 Jan,  188(2):642-58 2006 Jan [Abstract] | [PubMed] 14 Methanospirillum hungatei Strain: JF-1 Main cir AEMM Euryarchaeota Methanomicrobia NCBI: Tax 323259 3,544,738 bp 3,494 kbp 1,022 kbp 0.8026 95,881 0.89% ‑2.02% ‑0.71% 1.51% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished 15 Nanoarchaeum equitans Strain: Kin4M Main cir ANN Nanoarchaeota Nanoarchaeum NCBI: Tax 228908 490,885 bp 387 kbp 83 kbp 0.3116 15,391 2.05% 2.41% 2.29% ‑1.00% Show Oligos Base Atlas N/A N/A N/A N/A Proc Natl Acad Sci U S A. 2003 Oct 28,  100(22):12984-8. Epub 2003 Oct 17 2003 Oct 28 [Abstract] | [PubMed] | [NCBI Entrez] 16 Natronomonas pharaonis Strain: DSM2160 Main cir AEHH Euryarchaeota Halobacteria NCBI: Tax 348780 2,595,221 bp 1,334 kbp 301 kbp 0.9987 90,789 1.20% 1.53% 1.32% 0.20% Show Oligos Base Atlas N/A N/A N/A N/A Genome Res. 2005 Oct,  15(10):1336-43. Epub 2005 Sep 16 2005 Oct [Abstract] | [PubMed] | [NCBI Entrez] 17 Picrophilus torridus Strain: DSM9790 Main cir AETT Euryarchaeota Thermoplasmata NCBI: Tax 263820 1,545,895 bp 650 kbp 1,414 kbp 0.8309 68,006 1.35% 2.10% 1.83% ‑0.86% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished [NCBI Entrez] 18 Pyrobaculum aerophilum Strain: IM2 Main cir ACTT Crenarchaeota Thermoprotei NCBI: Tax 178306 2,222,430 bp 115 kbp 818 kbp 0.2122 20,990 0.50% 0.12% 0.32% 0.20% Show Oligos Base Atlas N/A N/A N/A N/A Proc Natl Acad Sci U S A. 2002 Jan 22,  99(2):984-9. Epub 2002 Jan 15 2002 Jan 22 [Abstract] | [PubMed] | [NCBI Entrez] 19 Pyrococcus abyssi Strain: GE5 Main cir AETT Euryarchaeota Thermococci NCBI: Tax 272844 1,765,118 bp 123 kbp 1,316 kbp 1.3545 132,593 2.80% ‑0.80% 0.81% 1.70% Show Oligos Base Atlas N/A N/A N/A N/A J Mol Biol. 2000 Apr 7,  297(4):895-906 2000 Apr 7 [Abstract] | [PubMed] | [NCBI Entrez] 20 Pyrococcus furiosus Strain: DSM3638 Main cir AETT Euryarchaeota Thermococci NCBI: Tax 186497 1,908,256 bp 24 kbp 830 kbp 1.2069 115,648 ‑0.51% ‑3.24% ‑2.12% 1.71% Show Oligos Base Atlas N/A N/A N/A N/A Genetics. 1999 Aug,  152(4):1299-305 1999 Aug [Abstract] | [PubMed] | [NCBI Entrez] 21 Pyrococcus horikoshii Strain: OT3 Main cir AETT Euryarchaeota Thermococci NCBI: Tax 70601 1,738,505 bp 111 kbp 706 kbp 2.1070 203,623 5.08% ‑0.27% 1.97% 2.28% Show Oligos Base Atlas N/A N/A N/A N/A DNA Res. 1998 Apr 30,  5(2):55-76 1998 Apr 30 [Abstract] | [PubMed] | [NCBI Entrez] 22 Sulfolobus acidocaldarius Strain: DSM639 Main cir ACTS Crenarchaeota Thermoprotei 2,225,959 bp 1,666 kbp 165 kbp 0.4297 39,564 1.16% 1.09% 1.11% ‑0.26% Show Oligos Base Atlas N/A N/A N/A N/A J Bacteriol 2005 Jul,  187(14):4992-9 2005 Jul [Abstract] | [PubMed] 23 Sulfolobus solfataricus Strain: P2 Main cir ACTS Crenarchaeota Thermoprotei 2,992,245 bp 639 kbp 2,011 kbp 0.5267 52,471 1.86% 1.00% 1.31% 0.03% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished [NCBI Entrez] 24 Sulfolobus tokodaii Strain: 7 Main cir ACSSS Crenarchaeota unclassified 2,694,765 bp 31 kbp 1,910 kbp 0.3883 35,050 ‑0.13% ‑0.33% ‑0.27% 0.18% Show Oligos Base Atlas N/A N/A N/A N/A DNA Res ,  8(4):123-40 2001 Aug 31 [Abstract] | [PubMed] | [NCBI Entrez] 25 Thermococcus kodakaraensis Strain: KOD1 Main cir AETT Euryarchaeota Thermococci 2,088,737 bp 1,722 kbp 934 kbp 0.4092 40,921 0.82% ‑0.85% 0.02% 0.84% Show Oligos Base Atlas N/A N/A N/A N/A Unpublished 26 Thermoplasma acidophilum Strain: DSM1728 Main cir AETT Euryarchaeota Thermoplasmata 1,564,906 bp 1,500 kbp 974 kbp 0.5249 49,733 2.02% 1.35% 1.66% 0.20% Show Oligos Base Atlas N/A N/A N/A N/A Nature 2000 Sep 28,  407(6803):508-13 2000 Sep 28 [Abstract] | [PubMed] | [NCBI Entrez] 27 Thermoplasma volcanium Strain: GSS1 Main cir AETT Euryarchaeota Thermoplasmata 1,584,804 bp 185 kbp 952 kbp 0.3413 31,102 1.87% 0.29% 0.92% 0.57% Show Oligos Base Atlas N/A N/A N/A N/A Proc Natl Acad Sci U S A 2000 Dec 19,  97(26):14257-62 2000 Dec 19 [Abstract] | [PubMed]

REFERENCES

• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed
• Peder Worning, Lars Juhl Jensen, Peter F. Hallin, Hans-Henrik Stærfeldt, and David W. Ussery (2006). Origin of Replication in Circular Prokaryotic Chromosomes Environmental Microbiology 8(2), 353-361 PDF

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