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Selection summary: 5 segments, 4 strains, 3 species, 2 genera

Available tables

Row %AT Organism Click to show species Sub-strain Taxgroup Segment Click to show segment Size(bp) Number of genes Coding density Estimated # Proteins Fraction Prot.Length Distribution Reference         1 30.5% Thermus thermophilus Strain: HB8 BDDT Deinococcus-Thermus Deinococci NCBI: Tax 300852 Main cir 1,849,742 bp 1,973 genes 95.1% 938 bp/gene 1,663 genes 18.6% Protein Lengths Unpublished [NCBI Entrez] 2 30.6% Thermus thermophilus Strain: HB27 BDDT Deinococcus-Thermus Deinococci NCBI: Tax 262724 Main cir 1,894,877 bp 1,982 genes 94.9% 956 bp/gene 1,698 genes 16.7% Protein Lengths Nat Biotechnol. 2004 May,  22(5):547-53. Epub 2004 Apr 4 2004 May [Abstract] | [PubMed] | [NCBI Entrez] 3 33.0% Deinococcus radiodurans Strain: R1 BDDD Deinococcus-Thermus Deinococci NCBI: Tax 243230 Chr 1 cir 2,648,638 bp 2,579 genes 87.9% 1,027 bp/gene 2,098 genes 22.9% Protein Lengths Science. 1999 Nov 19,  286(5444):1571-7 1999 Nov 19 [Abstract] | [PubMed] | [NCBI Entrez] 33.3% BDDD Deinococcus-Thermus Deinococci NCBI: Tax 243230 Chr 2 cir 412,348 bp 357 genes 89.0% 1,155 bp/gene 297 genes 20.2% Protein Lengths Science. 1999 Nov 19,  286(5444):1571-7 1999 Nov 19 [Abstract] | [PubMed] | [NCBI Entrez] 4 33.4% Deinococcus geothermalis Strain: DSM11300 DSM11300 BDDD Deinococcus-Thermus Deinococci NCBI: Tax 319795 Main cir 2,467,205 bp 2,335 genes 90.3% 1,057 bp/gene 2,010 genes 16.2% Protein Lengths Unpublished

REFERENCES

• Marie Skovgaard, Lars Juhl Jensen, Søren Brunak, David W. Ussery, and Anders Krogh (2001). On the Total Number of Genes and Their Length Distribution in Complete Microbial Genomes Trends in Genetics 17:425-428. PDF | Pubmed
• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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