Events News Research CBS CBS Publications Bioinformatics
Staff Contact About Internal CBS CBS Other


[login]

Selection summary: 8 segments, 6 strains, 5 species, 3 genera  Close the kingdom view of Bacteria and return to index
Available tables

Sigma Factor Predictions by profile HMM

Genome Atlas Database - BACTERIA

Acidobacteria Actinobacteria Aquificae
Bacteroidetes/Chlorobi Chlamydiae/Verrucomicrobia Chloroflexi
Cyanobacteria Deinococcus-Thermus Firmicutes
Fusobacteria Planctomycetes Proteobacteria
Spirochaetes Thermotogae unclassified
Search:

RowSize(bp)
Organism
Click to show species
Sub-strain
Segment
Click to show segment
Sigma 54 FactorsSigma 70 FactorsECF FactorsReference

     
1350,181 bpLeptospira interrogans
Strain: FiocruzL1130
Chr 2
cir
N/AN/A1 predictedJ Bacteriol. 2004 Apr186(7):2164-72
2004 Apr
[Abstract] | [PubMed] | [NCBI Entrez]
2358,943 bpLeptospira interrogans
Strain: 56601
Chr 2
cir
N/AN/A1 predictedNature. 2003 Apr 24422(6934):888-93
2003 Apr 24
[Abstract] | [PubMed] | [NCBI Entrez]
3904,246 bpBorrelia garinii
Strain: PBi
Main
lin
1 predicted2 predictedN/ANucleic Acids Res. 2004 Nov 1632(20):6038-46. Print 2004
2004 Nov 16
[Abstract] | [PubMed] | [NCBI Entrez]
4910,724 bpBorrelia burgdorferi
Strain: B31
Main
lin
1 predicted2 predictedN/ANature. 1997 Dec 11390(6660):580-6
1997 Dec 11
[Abstract] | [PubMed] | [NCBI Entrez]
51,138,011 bpTreponema pallidum
Strain: Nichols
Main
cir
1 predicted3 predicted1 predictedScience. 1998 Jul 17281(5375):375-88
1998 Jul 17
[Abstract] | [PubMed] | [NCBI Entrez]
62,843,201 bpTreponema denticola
Strain: ATCC35405
Main
cir
1 predicted4 predicted2 predictedProc Natl Acad Sci U S A. 2004 Apr 13101(15):5646-51. Epub 2004 Apr 2
2004 Apr 13
[Abstract] | [PubMed] | [NCBI Entrez]
74,277,185 bpLeptospira interrogans
Strain: FiocruzL1130
Chr 1
cir
1 predicted2 predicted9 predictedJ Bacteriol. 2004 Apr186(7):2164-72
2004 Apr
[Abstract] | [PubMed] | [NCBI Entrez]
84,332,241 bpLeptospira interrogans
Strain: 56601
Chr 1
cir
1 predicted2 predicted8 predictedNature. 2003 Apr 24422(6934):888-93
2003 Apr 24
[Abstract] | [PubMed] | [NCBI Entrez]



CORRESPONDENCE:

Scientific questions: David W. Ussery       Peter Fischer Hallin