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Selection summary: 4 segments, 1 strain, 1 species, 1 genus  Close the kingdom view of Eukaryotes and return to index
Available tables

Bias of purines and pyr/pur tracts in Sequenced Genomes

Genome Atlas Database - EUKARYOTES

Alveolata Choanoflagellida Cryptophyta
Euglenozoa Fungi/Metazoa Microsporidia
Mycetozoa Rhodophyta Stramenopiles
Viridiplantae unclassified
Search:

RowSize(bp)
Organism
Click to show species		Sub-strain
Taxgroup
Segment
Click to show segment
Purine
Stretches		Pyr/Pur
Stretches		%AT
Reference

     
119,431 bpSchizosaccharomyces pombe
Strain: 972		EFAASSS
Fungi/Metazoa
Fungi
NCBI: Tax 4896
mtDNA
cir
2.93%0.98%69.9%Unpublished
2,456,786 bpEFAS
Fungi/Metazoa
Fungi
NCBI: Tax 4896
Chr 3
unknown
3.73%0.70%63.7%Unpublished
4,468,099 bpEFAS
Fungi/Metazoa
Fungi
NCBI: Tax 4896
Chr 2
unknown
3.36%0.68%64.0%Unpublished
5,570,797 bpEFAS
Fungi/Metazoa
Fungi
NCBI: Tax 4896
Chr 1
unknown
3.41%0.63%63.9%Unpublished

REFERENCES

  • David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans-Henrik Stærfeldt, Peder Worning, and Anders Krogh (2002). Bias of Purine Stretches in Sequenced Genomes Computers in Chemistry 26:531-541 PDF | Pubmed
  • Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed


CORRESPONDENCE:

Scientific questions: David W. Ussery       Peter Fischer Hallin      

This file is last modified Thursday 1st of June 2006 16:58:48 GMT
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