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Selection summary: 28 segments, 27 strains, 27 species, 20 genera

Available tables

Organism Sub-strain Segment(id) Click to go to segment Links %AT Size(bp) Periodicity Predicted Origin Number of genes tRNA count rRNA count Coding density Atlas Promoter analysis Reference N. pharaonis Strain: DSM2160 Genome 36.9% 2,749,696 bp 2,843 genes 47 5s 1 16s 1 23s 1 90.8% 970 bp/gene Genome Res. 2005 Oct,  15(10):1336-43. Epub 2005 Sep 16 2005 Oct [Abstract] | [PubMed] | [NCBI Entrez] Main cir CBS Download NCBI Entrez 36.6% 2,595,221 bp Show 1,334 kbp 2,675 genes 47 Codon Usage 5s 1 16s 1 23s 1 90.8% 970 bp/gene Genome (cir) Structure (cir) Repeat (cir) Base (cir) Cruciform (cir) Z-DNA (cir) A-DNA (cir) Show all atlases Promoter Genome Res. 2005 Oct,  15(10):1336-43. Epub 2005 Sep 16 2005 Oct [Abstract] | [PubMed] | [NCBI Entrez] pPL131 cir CBS Download NCBI Entrez 42.8% 130,989 bp Show 34 kbp 132 genes Codon Usage 82.3% 992 bp/gene Genome (cir) Structure (cir) Repeat (cir) Base (cir) Cruciform (cir) Z-DNA (cir) A-DNA (cir) Show all atlases Promoter Genome Res. 2005 Oct,  15(10):1336-43. Epub 2005 Sep 16 2005 Oct [Abstract] | [PubMed] | [NCBI Entrez] pPL23 cir CBS Download NCBI Entrez 39.4% 23,486 bp Show 4 kbp 36 genes Codon Usage 83.9% 652 bp/gene Genome (cir) Structure (cir) Repeat (cir) Base (cir) Cruciform (cir) Z-DNA (cir) A-DNA (cir) Show all atlases Promoter Genome Res. 2005 Oct,  15(10):1336-43. Epub 2005 Sep 16 2005 Oct [Abstract] | [PubMed] | [NCBI Entrez]

REFERENCES

• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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