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Selection summary: 8 segments, 6 strains, 5 species, 3 genera

Available tables

Organism Sub-strain Segment(id) Click to go to segment Links %AT Size(bp) Periodicity Predicted Origin Number of genes tRNA count rRNA count Coding density Atlas Promoter analysis Reference T. denticola Strain: ATCC35405 Main cir CBS Download NCBI Entrez 62.1% 2,843,201 bp Show 325 kbp 2,767 genes Codon Usage 5s 2 16s 2 23s 2 91.5% 1,028 bp/gene Genome (cir) Structure (cir) Repeat (cir) Base (cir) Cruciform (cir) Z-DNA (cir) A-DNA (cir) Show all atlases Promoter Proc Natl Acad Sci U S A. 2004 Apr 13,  101(15):5646-51. Epub 2004 Apr 2 2004 Apr 13 [Abstract] | [PubMed] | [NCBI Entrez] T. pallidum Strain: Nichols Main cir CBS Download NCBI Entrez 47.2% 1,138,011 bp 10.7 3 kbp 1,031 genes Codon Usage 5s 2 16s 2 23s 2 92.1% 1,104 bp/gene Genome (cir) Structure (cir) Repeat (cir) Base (cir) Cruciform (cir) Z-DNA (cir) A-DNA (cir) Show all atlases Promoter Science. 1998 Jul 17,  281(5375):375-88 1998 Jul 17 [Abstract] | [PubMed] | [NCBI Entrez]

REFERENCES

• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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