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Selection summary: 8 segments, 6 strains, 5 species, 3 genera

Available tables

Organism Sub-strain Segment(id) Click to go to segment Links %AT Size(bp) Periodicity Predicted Origin Number of genes tRNA count rRNA count Coding density Atlas Promoter analysis Reference B. garinii Strain: PBi Genome 71.9% 986,914 bp 932 genes 33 5s 2 16s 2 23s 2 83.8% 1,043 bp/gene Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez] Main lin CBS Download NCBI Entrez 71.7% 904,246 bp Show N/A 832 genes 33 Codon Usage 5s 2 16s 2 23s 2 92.7% 1,087 bp/gene Genome (lin) Structure (lin) Repeat (lin) Base (lin) Cruciform (lin) Z-DNA (lin) A-DNA (lin) Show all atlases Promoter Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez] pCp26 cir CBS Download NCBI Entrez 74.4% 27,108 bp Show 11 kbp 26 genes Codon Usage 83.8% 1,043 bp/gene Genome (cir) Structure (cir) Repeat (cir) Base (cir) Cruciform (cir) Z-DNA (cir) A-DNA (cir) Show all atlases Promoter Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez] pLp54 lin CBS Download NCBI Entrez 73.5% 55,560 bp Show N/A 74 genes Codon Usage 72.0% 751 bp/gene Genome (lin) Structure (lin) Repeat (lin) Base (lin) Cruciform (lin) Z-DNA (lin) A-DNA (lin) Show all atlases Promoter Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez]

REFERENCES

• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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