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Selection summary: 8 segments, 6 strains, 5 species, 3 genera

Available tables

Genome Atlas Database - BACTERIA Acidobacteria Actinobacteria Aquificae Bacteroidetes/Chlorobi Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria Deinococcus-Thermus Firmicutes Fusobacteria Planctomycetes Proteobacteria Spirochaetes Thermotogae unclassified

Advanced Simple Search: Genus: Species: Strain: Segment: Segmentid: Show plasmids: Show merged segments:

Row Organism Click to show species Sub-strain Taxgroup Segment Click to show segment Links %AT Size(bp) Number of genes tRNA count rRNA count Reference         1 Treponema pallidum Strain: Nichols BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 243276 Main cir CBS Download NCBI Entrez 47.2% 1,138,011 bp 1,031 genes Codon Usage 5s 2 16s 2 23s 2 Science. 1998 Jul 17,  281(5375):375-88 1998 Jul 17 [Abstract] | [PubMed] | [NCBI Entrez] 2 Treponema denticola Strain: ATCC35405 BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 243275 Main cir CBS Download NCBI Entrez 62.1% 2,843,201 bp 2,767 genes Codon Usage 5s 2 16s 2 23s 2 Proc Natl Acad Sci U S A. 2004 Apr 13,  101(15):5646-51. Epub 2004 Apr 2 2004 Apr 13 [Abstract] | [PubMed] | [NCBI Entrez] 3 Leptospira interrogans Strain: FiocruzL1130 BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 267671 Chr 2 cir CBS Download NCBI Entrez 65.0% 350,181 bp 264 genes Codon Usage J Bacteriol. 2004 Apr,  186(7):2164-72 2004 Apr [Abstract] | [PubMed] | [NCBI Entrez] BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 267671 Chr 1 cir CBS Download NCBI Entrez 65.0% 4,277,185 bp 3,394 genes Codon Usage 5s 1 16s 2 23s 2 J Bacteriol. 2004 Apr,  186(7):2164-72 2004 Apr [Abstract] | [PubMed] | [NCBI Entrez] 4 Leptospira interrogans Strain: 56601 BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 189518 Chr 2 cir CBS Download NCBI Entrez 64.9% 358,943 bp 367 genes Codon Usage Nature. 2003 Apr 24,  422(6934):888-93 2003 Apr 24 [Abstract] | [PubMed] | [NCBI Entrez] BSpiro SL Spirochaetes Spirochaetes NCBI: Tax 189518 Chr 1 cir CBS Download NCBI Entrez 65.0% 4,332,241 bp 4,358 genes Codon Usage 5s 1 16s 2 23s 1 Nature. 2003 Apr 24,  422(6934):888-93 2003 Apr 24 [Abstract] | [PubMed] | [NCBI Entrez] 5 Borrelia garinii Strain: PBi BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 290434 Main lin CBS Download NCBI Entrez 71.7% 904,246 bp 832 genes 33 Codon Usage 5s 2 16s 2 23s 2 Nucleic Acids Res. 2004 Nov 16,  32(20):6038-46. Print 2004 2004 Nov 16 [Abstract] | [PubMed] | [NCBI Entrez] 6 Borrelia burgdorferi Strain: B31 BSpiro SS Spirochaetes Spirochaetes NCBI: Tax 224326 Main lin CBS Download NCBI Entrez 71.4% 910,724 bp 850 genes 33 Codon Usage 5s 2 16s 1 23s 2 Nature. 1997 Dec 11,  390(6660):580-6 1997 Dec 11 [Abstract] | [PubMed] | [NCBI Entrez]

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REFERENCES

• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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CORRESPONDENCE:

Scientific questions: David W. Ussery       Peter Fischer Hallin      

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