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Selection summary: 28 segments, 27 strains, 27 species, 20 genera

Available tables

Sulfolobus acidocaldarius DSM639 Main

Atlases of DNA properties

All other DNA Analysis

Top 50 oligonucleotides significantly overrepresented

Sulfolobus acidocaldarius DSM639 (Main)

In Leading Strand

In Lagging Strand

Oligo	Bits
CGACAAGA	1,003
ACGACAAG	835
ATAACGAC	816
TAACGACA	774
AACGACAA	725
CGACAAG	715
AATAACGA	666
CAAGAAAC	664
AACGACA	614
ACTAAAAC	550
TAACGAC	550
TAATAACG	531
GAAACTAA	499
GTAATAAC	497
ACGACAA	493
ACAAGAAA	464
AAACTAAA	457
GACAAGAA	455
ATAACGA	440
AAGAAACT	438
AACTAAAA	438
AGAAACTA	428
GA	409
AA	355
ACGACA	339
A	336
GACAAGA	336
AACGAC	306
CGACAA	290
AATAACG	287
CAAGAAA	287
CTAAAAC	272
TAACGA	260
AAA	258
AAACTAA	243
AGA	240
GTAATAA	233
AAGAAAC	230
AGAAACT	230
ACTAAAA	226
AACTAAA	225
GAAACTA	215
ACAAGAA	211
ATAACG	195
AAGA	190
GACAAG	180
ACAAGA	175
AACGA	170
TAATAAC	165
AACTAA	163

Oligo	Bits
TC	608
C	506
TCT	389
CT	382
CTC	323
T	279
CTT	230
CC	225
CTCT	224
TT	219
TCC	207
TTC	195
TTT	192
CCT	187
CTTT	174
TCTC	162
TCTT	160
TCCT	146
CCTC	127
TTTC	120
CTCC	118
CCTT	115
TTCC	105
TCCTT	98
ATC	98
CTTC	95
TCTCT	94
ATCT	92
TTCT	89
CTCTT	88
CATC	86
TTTCT	86
CTTTC	85
TTTACC	84
CTTTA	80
TCA	79
TCCTTT	77
TCTTT	77
TCTTC	77
CCTCC	75
ACTCT	73
ATCTC	72
CCTTT	71
TTCCT	68
TCTCC	68
TTTT	67
TCCTC	61
CAT	61
ATTCC	60
TCTA	59

CORRESPONDENCE:

Scientific questions: David W. Ussery Peter Fischer Hallin Hans-Henrik Staerfeldt

This file is last modified Thursday 4th 2006f May 2006 11:23:06 GMTGenome Atlas Overrepresented Oligos has been accessed 1,089,449 times since 2004-03-24 13:19:08Genome Atlas Overrepresented Oligos (for Sulfolobus acidocaldarius) has been accessed 3,500 times since 2005-08-09 11:30:11Total hits for all Archaea related pages has been accessed 7,409,081 times since 2004-03-23 14:56:13