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Output list from 'trnascan'
Statistics results by 'trnascan'
tRNAscan-SE v.1.23 (April 2002) scan results (on host organism)
Started: Fri Jun 16 13:11:40 MDT 2006
------------------------------------------------------------
Sequence file(s) to search: Anostoc_PCC7120_Main.fsa
Search Mode: Bacterial
Results written to: Standard output
Output format: Tabular
Searching with: tRNAscan + EufindtRNA -> Cove
Covariance model: TRNA2-bact.cm
tRNAscan parameters: Strict
EufindtRNA parameters: Relaxed (Int Cutoff= -36)
Search statistics saved in: Anostoc_PCC7120_Main.trna.stat
------------------------------------------------------------
First-pass (tRNAscan/EufindtRNA) Stats:
---------------
Sequences read: 1
Seqs w/at least 1 hit: 1
Bases read: 6413771 (x2 for both strands)
Bases in tRNAs: 36720
tRNAs predicted: 291
Av. tRNA length: 126
Script CPU time: 6.31 s
Scan CPU time: 22.76 s
Scan speed: 563.6 Kbp/sec
First pass search(es) ended: Fri Jun 16 13:12:41 MDT 2006
Cove Stats:
-----------
Candidate tRNAs read: 291
Cove-confirmed tRNAs: 47
Bases scanned by covels: 40794
% seq scanned by covels: 0.3 %
Script CPU time: 3.74 s
Cove CPU time: 250.52 s
Scan speed: 162.8 bp/sec
Cove analysis of tRNAs ended: Fri Jun 16 13:19:05 MDT 2006
Summary
--------
Overall scan speed: 45274.2 bp/sec
tRNAs decoding Standard 20 AA: 47
Selenocysteine tRNAs (TCA): 0
Possible suppressor tRNAs (CTA,TTA): 0
tRNAs with undetermined/unknown isotypes: 0
Predicted pseudogenes: 0
-------
Total tRNAs: 47
tRNAs with introns: 0
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Isotype / Anticodon Counts:
Ala : 6 AGC: GGC: 1 CGC: 1 TGC: 4
Gly : 3 ACC: GCC: 1 CCC: 1 TCC: 1
Pro : 3 AGG: GGG: 1 CGG: 1 TGG: 1
Thr : 3 AGT: GGT: 1 CGT: 1 TGT: 1
Val : 2 AAC: GAC: 1 CAC: TAC: 1
Ser : 4 AGA: GGA: 1 CGA: 1 TGA: 1 ACT: GCT: 1
Arg : 4 ACG: 1 GCG: CCG: 1 TCG: CCT: 1 TCT: 1
Leu : 4 AAG: GAG: 1 CAG: 1 TAG: 1 CAA: 1 TAA:
Phe : 1 AAA: GAA: 1
Asn : 2 ATT: GTT: 2
Lys : 2 CTT: 1 TTT: 1
Asp : 1 ATC: GTC: 1
Glu : 1 CTC: TTC: 1
His : 1 ATG: GTG: 1
Gln : 1 CTG: TTG: 1
Ile : 3 AAT: GAT: 3 TAT:
Met : 3 CAT: 3
Tyr : 1 ATA: GTA: 1
Supres: 0 CTA: TTA:
Cys : 1 ACA: GCA: 1
Trp : 1 CCA: 1
SelCys: 0 TCA:
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CORRESPONDENCE:
Scientific questions: David W. Ussery
Peter Fischer Hallin
