Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Mycobacterium tuberculosis CDC1551  

Data for AE000516  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE000516.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE000516_3436 CDS_3592435-3590930 118.2 2e-33 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE000516_3436 1/1 300 382 .. 1 94 [] 118.2 2e-33

Alignments of top-scoring domains:
AE000516_3436: domain 1 of 1, from 300 to 382: score 118.2, E = 2e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++++ e +eaL Es++RV S
AE000516_3 300 EIHHRVKNNLQTVAALLRLQARRTSNAEG-----REALIESVRRVSS 341

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d ++v+++e++++++ + + ++v++ ++ +
AE000516_3 342 IALVHDALSMSVD-EQVNLDEVIDRILPIMNDVASVDRP---IR--I 382


Histogram of all scores:
score obs exp (one = represents 21 sequences)
----- --- ---
-15 14 0|=
-14 48 0|===
-13 115 26|=*====
-12 334 275|=============*==
-11 1206 766|====================================*=====================
-10 907 991|============================================ *
-9 570 837|============================ *
-8 500 561|======================== *
-7 211 333|=========== *
-6 156 185|========*
-5 51 100|=== *
-4 34 53|==*
-3 21 27|=*
-2 9 14|*
-1 6 7|*
0 1 3|*
1 4 2|*
2 0 1|*
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 749.8370
P(chi-square) = 0

Total sequences searched: 4189

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: