Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

2 accessions found for Aquifex aeolicus VF5  

Data for AE000657  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE000657.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE000657_0771 CDS_778227-780167 60.6 3e-17 1
AE000657_0626 CDS_625825-624284 53.0 4.1e-15 1
AE000657_0170 CDS_144113-143094 48.0 1.1e-13 1
AE000657_0229 CDS_207067-206135 46.8 2.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE000657_0771 1/1 432 497 .. 1 87 [] 60.6 3e-17
AE000657_0626 1/1 378 448 .. 1 87 [] 53.0 4.1e-15
AE000657_0170 1/1 131 193 .. 1 87 [] 48.0 1.1e-13
AE000657_0229 1/1 96 161 .. 1 87 [] 46.8 2.4e-13

Alignments of top-scoring domains:
AE000657_0771: domain 1 of 1, from 432 to 497: score 60.6, E = 3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e + +l+H+L+TPL++I+gyaelL +e++ +
AE000657_0 432 VAGEIACSLAHQLNTPLASIMGYAELLNL---------SEKDQRT-- 467

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i+++a+r+ ++i +L l + ++
AE000657_0 468 ----------KEKLDLIIKQAHRCKEIIGKMLYLGKVDSR 497

AE000657_0626: domain 1 of 1, from 378 to 448: score 53.0, E = 4.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e + ++HE+++PLt I++++ +l++l+k +e + +++
AE000657_0 378 VWRESVKRIAHEIKNPLTPIKLNLGRILRQLEK-----EEIDKDKL- 418

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ i++e+er+++Lin+++ + r ++
AE000657_0 419 ----------REIVKAIYEEVERINNLINQFRSIGREREL 448

AE000657_0170: domain 1 of 1, from 131 to 193: score 48.0, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H+L+TPL++I++++e L++ s e+
AE000657_0 131 SVGYLALGVAHQLNTPLATISLALEELEK---------KCGSCEE-- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i++++ ++ + ++ lL ++r +++
AE000657_0 167 -------------IEVIKNALISCKNTVDKLLLFARKDNN 193

AE000657_0229: domain 1 of 1, from 96 to 161: score 46.8, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ eflanlsHEL+TPL++++ ++e+Ll+ e + +
AE000657_0 96 TQKEFLANLSHELKTPLAVVMNTLETLLD---------MEEESVK-- 131

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ ++l+ ++ +L + + ls
AE000657_0 132 ----------RELIGRALKRVKEAISLTETVYMLSFSKGK 161


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 2 0|=
-13 12 1|*=
-12 60 34|=====*====
-11 163 180|============================ *
-10 280 334|=============================================== *
-9 300 345|================================================== *
-8 256 258|==========================================*
-7 171 163|===========================*=
-6 117 93|===============*====
-5 62 51|========*==
-4 40 27|====*==
-3 20 14|==*=
-2 14 7|=*=
-1 10 3|*=
0 6 2|*
1 4 1|*
> 2 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 56.1521
P(chi-square) = 1.923e-08

Total sequences searched: 1522

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: