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Data for AE000666  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE000666.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE000666_0441 CDS_381910-383031 64.1 3.7e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE000666_0441 1/1 151 219 .. 1 87 [] 64.1 3.7e-18

Alignments of top-scoring domains:
AE000666_0441: domain 1 of 1, from 151 to 219: score 64.1, E = 3.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL aI g++ +L e+++ ++l++e
AE000666_0 151 ELEAFAYSVSHDLRVPLRAIDGFSRILVEDYE------DKLDDEG-- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i++ ++ + +Li+d+L lsr++ +
AE000666_0 190 ----------VRILGIIRDNTRKMGQLIDDILLLSRAGRQ 219


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 7 0|==
-13 29 1|*====
-12 104 42|======*===========
-11 224 221|====================================*=
-10 346 411|==========================================================*
-9 344 424|==========================================================*
-8 296 317|================================================== *
-7 201 200|=================================*
-6 127 115|===================*==
-5 85 63|==========*====
-4 44 33|=====*==
-3 24 17|==*=
-2 20 9|=*==
-1 6 4|*
0 3 2|*
1 5 1|*
2 1 0|=
3 0 0|
4 1 0|=
5 0 0|
> 6 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 140.8468
P(chi-square) = 2.826e-25

Total sequences searched: 1869

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: