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1 accessions found for Archaeoglobus fulgidus DSM 4304  

Data for AE000782  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE000782.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE000782_1464 CDS_1341402-1338676 51.4 1.9e-14 1
AE000782_2006 CDS_1830162-1832180 40.4 2.5e-11 1
AE000782_1022 CDS_943500-942211 40.1 2.9e-11 1
AE000782_1453 CDS_1333906-1332422 39.1 5.6e-11 1
AE000782_1619 CDS_1470114-1471085 38.8 7.1e-11 1
AE000782_1496 CDS_1369968-1370984 36.7 2.8e-10 1
AE000782_0441 CDS_404314-406629 35.0 8.2e-10 1
AE000782_1745 CDS_1583975-1585762 33.6 2.1e-09 1
AE000782_0274 CDS_256572-258461 33.3 2.5e-09 1
AE000782_1033 CDS_954209-953538 30.2 2e-08 1
AE000782_0403 CDS_371625-374216 29.3 3.4e-08 1
AE000782_1700 CDS_1541672-1543258 28.0 8.2e-08 1
AE000782_2391 CDS_2163118-2161475 27.9 8.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE000782_1464 1/1 688 756 .. 1 87 [] 51.4 1.9e-14
AE000782_2006 1/1 592 650 .. 1 87 [] 40.4 2.5e-11
AE000782_1022 1/1 351 409 .. 1 87 [] 40.1 2.9e-11
AE000782_1453 1/1 424 482 .. 1 87 [] 39.1 5.6e-11
AE000782_1619 1/1 126 187 .. 1 87 [] 38.8 7.1e-11
AE000782_1496 1/1 132 193 .. 1 87 [] 36.7 2.8e-10
AE000782_0441 1/1 699 757 .. 1 87 [] 35.0 8.2e-10
AE000782_1745 1/1 527 586 .. 1 87 [] 33.6 2.1e-09
AE000782_0274 1/1 557 614 .. 1 87 [] 33.3 2.5e-09
AE000782_1033 1/1 153 209 .. 1 87 [] 30.2 2e-08
AE000782_0403 1/1 795 856 .. 1 87 [] 29.3 3.4e-08
AE000782_1700 1/1 334 396 .. 1 87 [] 28.0 8.2e-08
AE000782_2391 1/1 474 530 .. 1 87 [] 27.9 8.7e-08

Alignments of top-scoring domains:
AE000782_1464: domain 1 of 1, from 688 to 756: score 51.4, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + ++sH+LR PL ++gy+++L e++ +e+ ee++
AE000782_1 688 ELEAYVHAISHDLRAPLRNLQGYVSALVEDY-------GEKLEEDA- 726

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++++ +e ++ LindlL+++r
AE000782_1 727 ----------RFYLSRLKALTEKMDGLINDLLEYARVSKA 756

AE000782_2006: domain 1 of 1, from 592 to 650: score 40.4, E = 2.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +a+l +R+PL+aIr+++el ++
AE000782_2 592 ENIRTIAYLVDRIRNPLAAIRAFTELFVDD----------------- 621

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i++++er+ ++++ Ld s++ ++
AE000782_2 622 ----------EEVSKKIIQQIERIVDIVEK-LDVSWANSE 650

AE000782_1022: domain 1 of 1, from 351 to 409: score 40.1, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +a+l +R+PLtaIr++ae++ +
AE000782_1 351 ENTKVIAYLVDRIRNPLTAIRAFAEVMISD----------------- 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i ++++r+ +i + Ld s++ ++
AE000782_1 381 ----------DKVRERITQQVDRIVGIIKN-LDSSWAKSE 409

AE000782_1453: domain 1 of 1, from 424 to 482: score 39.1, E = 5.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e +a l +R+PL+a+++ +e+ e+
AE000782_1 424 RNIEQFAILVDHIRNPLAALQLITEMEVED----------------- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++++r+++Li+d Ld +ie++
AE000782_1 454 ----------EKVRKKIIEQVKRIEKLIRD-LDRGWIESE 482

AE000782_1619: domain 1 of 1, from 126 to 187: score 38.8, E = 7.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + + l+H++ + Lt+I+ yaelL+++++
AE000782_1 126 YVRLLNSILRHDILNILTTISSYAELLEDGFN--------------- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i++++ +Li +++l+ ++
AE000782_1 158 ----------RKFLDKIKEAVSKGVELIKKIRELETSTSE 187

AE000782_1496: domain 1 of 1, from 132 to 193: score 36.7, E = 2.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++l+H++ + t +++y+elL+ee+
AE000782_1 132 YLKFLNSMLRHDILNIFTRMQAYCELLEEEFK--------------- 163

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyle+i++++e+ rLi +++l+ ++
AE000782_1 164 ----------PEYLEKIKESIESGVRLIHKIRELESSTTE 193

AE000782_0441: domain 1 of 1, from 699 to 757: score 35.0, E = 8.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e +a l +R+PL+a +gy+e+ e+
AE000782_0 699 KNIEQFAILVDHIRNPLAAAQGYVEIFVEN----------------- 728

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++i+++++r +L+++ L+ + e++
AE000782_0 729 ----------EEAKKKIKEQLDRVVELVEQ-LERGWVESE 757

AE000782_1745: domain 1 of 1, from 527 to 586: score 33.6, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++++l +R+PL+a r+++el ++ +
AE000782_1 527 ENIRLVSHLVDRIRNPLAAARAFCELREKLG---------------- 557

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e++++ ++r +Li+d Ld ++ +
AE000782_1 558 ----------GEAFEKVISNIDRVTELIED-LDRVWANLE 586

AE000782_0274: domain 1 of 1, from 557 to 614: score 33.3, E = 2.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + l +l+ LR+P++ I+g++e+ +
AE000782_0 557 ENLKQLESLADRLRNPVAIISGFLEIKDD------------------ 585

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++++ i++++er++r+++dl r+++
AE000782_0 586 -------IGYERAFREIENQIERINRILDDL----RLQET 614

AE000782_1033: domain 1 of 1, from 153 to 209: score 30.2, E = 2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e + l+ LR+PL++I+g ael++e ++
AE000782_1 153 ENLEQFQFLADRLRNPLAVIQGVAELAEE-------------MDT-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++r+a+ + + ++ l ea+
AE000782_1 185 ----------NTVFEMVRRSAKKMKEVLDSL-----SEAE 209

AE000782_0403: domain 1 of 1, from 795 to 856: score 29.3, E = 3.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l+ LR+PL+ I+gy+e+ +++++
AE000782_0 795 ENLSQFEHLADRLRNPLAIIKGYLEIRENFSF--------------- 826

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++++++ r+++++++l+ + +
AE000782_0 827 ----------DEFAKRVEEQVCRIENILDELRAREIVTYE 856

AE000782_1700: domain 1 of 1, from 334 to 396: score 28.0, E = 8.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++H++ + Lt+I++++e+L+e + +++
AE000782_1 334 NLRLVNKLMRHDILNDLTSIQLAVEVLKE---------EGMNDGM-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+r++ r+ +Li+++++l+ i
AE000782_1 370 -------------VMNIERSVSRIADLIRRVRTLEEIMGR 396

AE000782_2391: domain 1 of 1, from 474 to 530: score 27.9, E = 8.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e +a l +R+PL++I g+a+l + e+
AE000782_2 474 KNIEQFAILVDKIRNPLAVITGFADLFGN-------------MEK-- 505

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++il++++ ++++i++ L+ ++e++
AE000782_2 506 --------------DKILEQVRKIEEIIEQ-LEAGWLESE 530


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 8 0|=
-13 48 1|*=====
-12 133 55|======*==========
-11 258 285|================================= *
-10 467 529|==========================================================*
-9 459 546|==========================================================*
-8 384 409|================================================ *
-7 265 257|================================*=
-6 151 148|==================*
-5 95 81|==========*=
-4 46 43|=====*
-3 33 23|==*==
-2 10 12|=*
-1 12 6|*=
0 7 3|*
1 5 1|*
2 2 0|=
3 1 0|=
> 4 21 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 148.5505
P(chi-square) = 2.947e-26

Total sequences searched: 2407

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: