Crenarchaeota Euryarchaeota Nanoarchaeota
Other Archaea
Classification of phyla is from NCBI page
Search:
54 projects found  

1 accessions found for Archaeoglobus fulgidus DSM 4304  

Data for AE000782  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE000782.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 4 0|=
-14 4 0|=
-13 21 15|=*=
-12 92 158|========== *
-11 579 440|===========================================*==============
-10 524 569|===================================================== *
-9 445 481|============================================= *
-8 321 322|================================*
-7 165 191|================= *
-6 136 106|==========*===
-5 45 57|=====*
-4 27 30|==*
-3 24 15|=*=
-2 5 8|*
-1 7 4|*
0 3 2|*
1 3 1|*
2 2 0|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 100.3100
P(chi-square) = 1.55e-16

Total sequences searched: 2407

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: