Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Neisseria meningitidis MC58  

Data for AE002098  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE002098.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE002098_1714 CDS_1881834-1880890 47.7 1.8e-13 1
AE002098_1538 CDS_1667498-1669015 45.0 1e-12 1
AE002098_0569 CDS_627130-625724 44.8 1.2e-12 1
AE002098_0105 CDS_121441-123561 36.9 2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE002098_1714 1/1 91 156 .. 1 87 [] 47.7 1.8e-13
AE002098_1538 1/1 312 381 .. 1 87 [] 45.0 1e-12
AE002098_0569 1/1 236 299 .. 1 87 [] 44.8 1.2e-12
AE002098_0105 1/1 483 555 .. 1 87 [] 36.9 2e-10

Alignments of top-scoring domains:
AE002098_1714: domain 1 of 1, from 91 to 156: score 47.7, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++HELRTP+ta+ + ae L + +l+++
AE002098_1 91 HRQRFVADAAHELRTPMTALPLQAERLNN---------MPLPPDA-- 126

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++++r +L+++lL l+r ++
AE002098_1 127 ----------ARQPAVLQQSIRRNKHLLEQLLALARSQSD 156

AE002098_1538: domain 1 of 1, from 312 to 381: score 45.0, E = 1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++anl+HE+R+P++aIr + +lL+e+++ +++++
AE002098_1 312 ALGQLTANLAHEIRNPMSAIRHANDLLRENME-----AGAADPFN-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i+ + r++++++d+ l +
AE002098_1 352 ----------AKLCKIIDGNICRIDKMLEDISSLNKRNKT 381

AE002098_0569: domain 1 of 1, from 236 to 299: score 44.8, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sHE+R PL+ +++ + l+++ ++ +q
AE002098_0 236 KERHLLHHVSHEMRSPLARMQAIVGLIQA-----------QPQKQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++ e+ r++ L +lL+lsr+e+
AE002098_0 270 ----------EQYLKRLEGELTRMDTLAGELLTLSRLETS 299

AE002098_0105: domain 1 of 1, from 483 to 555: score 36.9, E = 2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e + l+HE+R+PLt I++ ae L +l ++l+e++++
AE002098_0 483 AWGEVAKRLAHEIRNPLTPIQLSAERLAWKLG------GKLDEQDAQ 523

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti +++ l ++++ ++ ++r +
AE002098_0 524 IL--------TRSTDTIVKQVAALKEMVEAFRNYARSPSL 555


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 18 0|===
-13 51 1|*=======
-12 130 47|======*============
-11 267 244|==================================*====
-10 351 453|=================================================== *
-9 385 468|======================================================= *
-8 322 350|============================================== *
-7 211 221|===============================*
-6 142 127|==================*==
-5 71 69|=========*=
-4 49 37|=====*=
-3 32 19|==*==
-2 9 10|=*
-1 8 5|*=
0 5 2|*
1 4 1|*
2 1 0|=
3 0 0|
4 1 0|=
5 0 0|
> 6 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 202.9881
P(chi-square) = 1.784e-37

Total sequences searched: 2063

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: