Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

2 accessions found for Chlamydia muridarum Nigg  

Data for AE002160  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE002160.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE002160_0736 CDS_894070-895128 73.5 3.9e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE002160_0736 1/1 151 216 .. 1 87 [] 73.5 3.9e-21

Alignments of top-scoring domains:
AE002160_0736: domain 1 of 1, from 151 to 216: score 73.5, E = 3.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+l+HE+R+PLt+I+g+a +L+e els+e +
AE002160_0 151 ELGKIAATLAHEIRNPLTGISGFATILKE----------ELSSERH- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i++ +++l++L++ +L++++i+
AE002160_0 187 ----------QRMLNAIIEGSRSLNSLVSSMLEYTKIQPL 216


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 3 0|=
-13 9 0|===
-12 44 20|======*========
-11 88 107|============================== *
-10 164 198|======================================================= *
-9 161 205|====================================================== *
-8 135 153|============================================= *
-7 107 96|===============================*====
-6 79 55|==================*========
-5 42 30|=========*====
-4 27 16|=====*===
-3 24 8|==*=====
-2 12 4|=*==
-1 5 2|*=
0 1 1|*
1 0 0|
2 1 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 96.9175
P(chi-square) = 6.601e-17

Total sequences searched: 904

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: