Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

2 accessions found for Chlamydophila pneumoniae AR39  

Data for AE002161  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE002161.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE002161_0163 CDS_168908-167784 65.5 8.5e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE002161_0163 1/1 161 226 .. 1 87 [] 65.5 8.5e-19

Alignments of top-scoring domains:
AE002161_0163: domain 1 of 1, from 161 to 226: score 65.5, E = 8.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+HE+R+PL++I g+a++L++ + s+ +
AE002161_0 161 ELGKMTATLAHEIRNPLSGIVGFASILKK---------EISSPRH-- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++ +++l++L++ +L++++ +
AE002161_0 197 ----------QRMLSSIISGTRSLNNLVSSMLEYTKSQPL 226


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 2 0|=
-14 10 0|===
-13 29 0|========
-12 85 25|======*===============
-11 125 131|================================*
-10 167 244|========================================== *
-9 198 252|================================================== *
-8 164 188|========================================= *
-7 133 118|=============================*====
-6 85 68|================*=====
-5 54 37|=========*====
-4 25 20|====*==
-3 14 10|==*=
-2 5 5|=*
-1 2 2|*
0 5 1|*=
1 2 0|=
2 3 0|=
3 0 0|
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 194.8754
P(chi-square) = 1.888e-36

Total sequences searched: 1110

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: