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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pasteurella multocida subsp. multocida str. Pm70  

Data for AE004439  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE004439.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE004439_0313 CDS_369103-370959 81.7 4.1e-23 1
AE004439_0431 CDS_507613-506318 70.6 5.7e-20 1
AE004439_1888 CDS_2129238-2130641 55.8 8.8e-16 1
AE004439_0215 CDS_239076-240449 50.8 2.3e-14 1
AE004439_0724 CDS_854154-855869 42.2 6.4e-12 1
AE004439_1459 CDS_1649743-1651725 39.2 4.6e-11 1
AE004439_1380 CDS_1572958-1575546 30.5 1.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE004439_0313 1/1 121 186 .. 1 87 [] 81.7 4.1e-23
AE004439_0431 1/1 203 269 .. 1 87 [] 70.6 5.7e-20
AE004439_1888 1/1 244 307 .. 1 87 [] 55.8 8.8e-16
AE004439_0215 1/1 236 302 .. 1 87 [] 50.8 2.3e-14
AE004439_0724 1/1 352 421 .. 1 87 [] 42.2 6.4e-12
AE004439_1459 1/1 444 512 .. 1 87 [] 39.2 4.6e-11
AE004439_1380 1/1 509 574 .. 1 87 [] 30.5 1.3e-08

Alignments of top-scoring domains:
AE004439_0313: domain 1 of 1, from 121 to 186: score 81.7, E = 4.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++++a++sHELRTPL++I+g++ +Ll+ ++l+e q
AE004439_0 121 DKTRLMATISHELRTPLNGIIGLSRILLD---------EKLTETQ-- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ti+ +a +l ++ +d+ dl++i+a
AE004439_0 157 ----------QNYLKTIHVSAISLGHIFSDIIDLEKIDAR 186

AE004439_0431: domain 1 of 1, from 203 to 269: score 70.6, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+n+ HELRTPLt+++gy+elL++ + + s+
AE004439_0 203 SRQTFLSNINHELRTPLTVLQGYLELLEA--------EKDHSALA-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++ +++r+ +L+++l l++ie+
AE004439_0 240 ----------QKAIHAMQAQSQRMANLLQQLNVLAKIESS 269

AE004439_1888: domain 1 of 1, from 244 to 307: score 55.8, E = 8.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sHELRTPLt +++++ lL++++ +e + e
AE004439_1 244 SQQVLLSSISHELRTPLTRLQLALALLRRRF-------GEDNTEI-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i+ ea+rl+++indlL lsr +
AE004439_1 282 --------------HRIEIEARRLDKMINDLLLLSRQQLH 307

AE004439_0215: domain 1 of 1, from 236 to 302: score 50.8, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e++++ + ++ r
AE004439_0 236 RERRFTSDAAHELRSPLAALRIQTEVAQM---------AGDDALMR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ + ++r ++Li++lL+lsr+++
AE004439_0 273 ----------EQALQNLTLGIDRASQLIERLLTLSRLDNL 302

AE004439_0724: domain 1 of 1, from 352 to 421: score 42.2, E = 6.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ +++HE+++PL+aIr+y+e + + + l++e++
AE004439_0 352 ILGEMSTGIAHEINQPLSAIRMYVEGVKY-------HLAQLPAEKNT 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+++l++++r ++i++l+ ++
AE004439_0 392 ----------VEILDKVLQQVDRSADIIRNLMNWAKGKKT 421

AE004439_1459: domain 1 of 1, from 444 to 512: score 39.2, E = 4.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ l ++sHE+ +PL+a+ +y+ +++ + +++++e +
AE004439_1 444 AVGKTLTSISHEITQPLNAMNAYLFSAKKAV-------SKQNSEAA- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl++i + +er ++ +l+++sr ++g
AE004439_1 483 ----------LEYLNKINHLVERTALIVKRLRQFSRQGSG 512

AE004439_1380: domain 1 of 1, from 509 to 574: score 30.5, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L++I+g+++l+ + l+e q
AE004439_1 509 AIGHLTGGIAHDFNNFLAVIIGNLDLIDP---------HGLDERQ-- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++l++ae L ++lL ++r +
AE004439_1 545 ----------VKRLQRALKAAENSATLTQRLLAYARKQPL 574


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 3 0|=
-13 22 1|*===
-12 95 46|======*=======
-11 199 238|============================= *
-10 332 442|================================================ *
-9 387 457|======================================================== *
-8 327 342|=============================================== *
-7 275 215|==============================*=========
-6 149 124|=================*====
-5 107 68|=========*======
-4 50 36|=====*==
-3 26 19|==*=
-2 14 10|=*
-1 10 5|*=
0 5 2|*
1 3 1|*
2 1 0|=
> 3 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 154.4489
P(chi-square) = 1.835e-27

Total sequences searched: 2014

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: