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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Pasteurella multocida subsp. multocida str. Pm70  

Data for AE004439  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE004439.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE004439_1591 CDS_1803336-1801630 62.9 1.5e-18 1
AE004439_1339 CDS_1532731-1531166 44.9 2.9e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE004439_1591 1/1 363 435 .. 1 70 [] 62.9 1.5e-18
AE004439_1339 1/1 316 380 .. 2 70 .] 44.9 2.9e-13

Alignments of top-scoring domains:
AE004439_1591: domain 1 of 1, from 363 to 435: score 62.9, E = 1.5e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpeeareald
ERa IARELHDs++Q L+ + +ql l+++ + +++++++++ ++
AE004439_1 363 ERAIIARELHDSLAQVLAFLQIQLTLLKHNINQksEEAAQQSINIIA 409

eirelarealaevRrllgdLR.paal<-*
++++r+++ ++R+ll ++R + ++
AE004439_1 410 SFEQALRDGYVQLRELLATFRlTVQE 435

AE004439_1339: domain 1 of 1, from 316 to 380: score 44.9, E = 2.9e-13
*->RaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeir
R+ IARELHD +gQ+++ai+ q++ ++rl + + + + + +i+
AE004439_1 316 RQEIARELHDQIGQNITAIRTQASILKRLN--PHP--QEQNNANMIE 358

elarealaevRrllgdLRpaal<-*
+l+ ++ v ll +LRp +l
AE004439_1 359 HLSLNIYDTVKGLLNRLRPRVL 380


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 8 0|==
-13 48 0|=======
-12 80 22|===*========
-11 158 184|======================= *
-10 385 428|======================================================= *
-9 413 486|==========================================================*
-8 302 374|============================================ *
-7 227 235|=================================*
-6 152 133|==================*===
-5 109 71|==========*=====
-4 65 37|=====*====
-3 28 19|==*=
-2 15 9|=*=
-1 12 4|*=
0 5 2|*
1 2 1|*
> 2 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 230.2284
P(chi-square) = 1.459e-313

Total sequences searched: 2014

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: