Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for AE004969  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE004969.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE004969_0695 CDS_751155-749386 69.5 1.6e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE004969_0695 1/1 385 453 .. 1 70 [] 69.5 1.6e-20

Alignments of top-scoring domains:
AE004969_0695: domain 1 of 1, from 385 to 453: score 69.5, E = 1.6e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ IA+ LHDs++Q+L+ ++lq++++++++ +++ +ea+e +
AE004969_0 385 ERNLIAQGLHDSIAQALTFLNLQVQMLETAF--AENKReEAAENIGF 429

irelarealaevRrllgdLRpaal<-*
i++ ++e++++vR+ll ++R+ +
AE004969_0 430 IKTGVQECYEDVRELLLNFRTKIS 453


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 28 0|====
-13 76 0|===========
-12 124 22|===*==============
-11 145 183|===================== *
-10 330 425|================================================ *
-9 398 483|========================================================= *
-8 271 372|======================================= *
-7 214 234|=============================== *
-6 151 132|==================*===
-5 130 71|==========*========
-4 46 37|=====*=
-3 35 19|==*==
-2 22 9|=*==
-1 14 4|*=
0 4 2|*
1 7 1|*
2 2 0|=
3 2 0|=
4 1 0|=
5 0 0|
> 6 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 618.1982
P(chi-square) = 0

Total sequences searched: 2002

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: