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Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Escherichia coli O157:H7 EDL933  

Data for AE005174  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE005174.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE005174_1782 CDS_1814900-1813104 82.2 7.9e-24 1
AE005174_3344 CDS_3371689-3373389 76.1 5e-22 1
AE005174_0413 CDS_445304-443763 68.0 1.2e-19 1
AE005174_4633 CDS_4706254-4704749 63.7 2.3e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE005174_1782 1/1 390 458 .. 1 70 [] 82.2 7.9e-24
AE005174_3344 1/1 361 428 .. 1 70 [] 76.1 5e-22
AE005174_0413 1/1 315 380 .. 1 70 [] 68.0 1.2e-19
AE005174_4633 1/1 305 371 .. 1 70 [] 63.7 2.3e-18

Alignments of top-scoring domains:
AE005174_1782: domain 1 of 1, from 390 to 458: score 82.2, E = 7.9e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d+ pe re l +i
AE005174_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
AE005174_1 435 RNELNASWAQLRELLTTFRlQLTE 458

AE005174_3344: domain 1 of 1, from 361 to 428: score 76.1, E = 5e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r + ++d++ a+ ++
AE005174_3 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADF 405

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
AE005174_3 406 SQALNDAYRQLRELLTTFRLTLQ 428

AE005174_0413: domain 1 of 1, from 315 to 380: score 68.0, E = 1.2e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ +ARELHD++gQ+++ai +q++l++r ++dp++++ a+ +i
AE005174_0 315 TRKNLARELHDEIGQNITAIQIQSQLVKR----ARDPAQIQSAASQI 357

relarealaevRrllgdLRpaal<-*
elar+ +R+ll++LRp+al
AE005174_0 358 NELARRIHLSTRQLLRQLRPPAL 380

AE005174_4633: domain 1 of 1, from 305 to 371: score 63.7, E = 2.3e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++ +++ + i
AE005174_4 305 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---ADNASVKQSGQLI 348

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
AE005174_4 349 EQLSLGVYDAVRRLLGRLRPRQL 371


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-16 2 0|=
-15 7 0|=
-14 68 0|====
-13 175 0|===========
-12 215 59|===*=========
-11 358 490|====================== *
-10 858 1137|=================================================== *
-9 1001 1291|==========================================================*
-8 829 995|================================================= *
-7 625 625|====================================*
-6 437 354|====================*=====
-5 362 189|===========*==========
-4 174 99|=====*=====
-3 98 51|==*===
-2 65 26|=*==
-1 35 13|*==
0 20 6|*=
1 7 3|*
2 5 1|*
> 3 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 995.6662
P(chi-square) = 0

Total sequences searched: 5349

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: