Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Caulobacter crescentus CB15  

Data for AE005673  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE005673.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE005673_1145 CDS_1307700-1308899 77.6 1.3e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE005673_1145 1/1 208 275 .. 1 70 [] 77.6 1.3e-22

Alignments of top-scoring domains:
AE005673_1145: domain 1 of 1, from 208 to 275: score 77.6, E = 1.3e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+R+LHD +g++L+++++++ela+rl+ +d+ +a+++++++
AE005673_1 208 ERERISRDLHDLLGHTLTLVAVKAELAARLV--SRDASAAEREMQAV 252

relarealaevRrllgdLRpaal<-*
+++areal+evR ++ +++ a l
AE005673_1 253 AAAAREALSEVRTAVVGMKGASL 275


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 9 0|=
-13 32 0|===
-12 76 41|===*===
-11 110 342|========== *
-10 429 794|======================================= *
-9 645 902|==========================================================*
-8 602 695|======================================================= *
-7 531 437|=======================================*=========
-6 415 247|======================*===============
-5 364 132|===========*======================
-4 198 69|======*===========
-3 119 35|===*=======
-2 78 18|=*======
-1 50 9|*====
0 35 4|*===
1 19 2|*=
2 10 1|*
3 6 0|=
4 2 0|=
5 2 0|=
6 1 0|=
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1785.9795
P(chi-square) = 0

Total sequences searched: 3737

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: