Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Sinorhizobium meliloti 1021  

Data for AE006469  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE006469.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE006469_1252 CDS_1299769-1297079 63.0 5.2e-18 1
AE006469_0670 CDS_674898-673381 39.8 1.9e-11 1
AE006469_0618 CDS_622009-623595 39.7 2.1e-11 1
AE006469_0507 CDS_523213-525114 32.5 2.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE006469_1252 1/1 663 731 .. 1 87 [] 63.0 5.2e-18
AE006469_0670 1/1 275 346 .. 1 87 [] 39.8 1.9e-11
AE006469_0618 1/1 161 226 .. 1 87 [] 39.7 2.1e-11
AE006469_0507 1/1 406 476 .. 1 87 [] 32.5 2.3e-09

Alignments of top-scoring domains:
AE006469_1252: domain 1 of 1, from 663 to 731: score 63.0, E = 5.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+LRTPL++I g++ L+ + + +see r
AE006469_1 663 FLAALLSSISHDLRTPLATITGAVTSLRQLG-------ERMSEESR- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++e+ rl r + +lLd++rieag
AE006469_1 702 ----------DDLLKSIEEESGRLTRFVANLLDMTRIEAG 731

AE006469_0670: domain 1 of 1, from 275 to 346: score 39.8, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++++l+HEL++PL+aI y++ + + l++d + +r
AE006469_0 275 EMGEMASTLAHELNQPLSAIANYSHGCTR-----LLRDMDDAVATR- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re+le + +++ r ++i l+++ ++
AE006469_0 316 ---------IREALEEVASQSLRAGQIIKHLREFVTKGET 346

AE006469_0618: domain 1 of 1, from 161 to 226: score 39.7, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+I g++e++++ l +e++
AE006469_0 161 AVGQLTGGLAHDFNNLLTVITGNLEMIEA----------RLQDEKL- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++ +a+ +L +lL + r +
AE006469_0 197 ----------MPLLQEAQAAADDGAKLTAQLLAFGRRQPL 226

AE006469_0507: domain 1 of 1, from 406 to 476: score 32.5, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a+++HEL++PL aIr +ae++ +++++ + + +
AE006469_0 406 TAGALSASIAHELNQPLGAIRINAETAAL-----MLERPNPDLKLI- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+++ +r ++i++++ l r +++
AE006469_0 447 ----------QQILADIRDDDQRAGDIIDRMRGLLRKRSE 476


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 1 0|=
-13 14 0|===
-12 62 29|=====*=======
-11 142 153|============================= *
-10 230 284|============================================== *
-9 240 293|================================================ *
-8 230 220|===========================================*==
-7 161 138|===========================*=====
-6 100 79|===============*====
-5 51 43|========*==
-4 32 23|====*==
-3 10 12|==*
-2 1 6|=*
-1 6 3|*=
0 6 1|*=
> 1 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 70.6792
P(chi-square) = 1.12e-11

Total sequences searched: 1294

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: