Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Chlorobium tepidum TLS  

Data for AE006470  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE006470.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE006470_0650 CDS_656128-657327 96.6 2.7e-27 1
AE006470_2032 CDS_1955978-1958005 59.5 9.2e-17 1
AE006470_0195 CDS_205732-207066 53.4 4.6e-15 1
AE006470_1376 CDS_1309884-1307458 45.3 9.2e-13 1
AE006470_0525 CDS_540589-538457 39.3 4.7e-11 1
AE006470_1673 CDS_1604950-1606587 36.3 3.3e-10 1
AE006470_1356 CDS_1293697-1292621 35.8 4.8e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE006470_0650 1/1 172 239 .. 1 87 [] 96.6 2.7e-27
AE006470_2032 1/1 298 364 .. 1 87 [] 59.5 9.2e-17
AE006470_0195 1/1 224 289 .. 1 87 [] 53.4 4.6e-15
AE006470_1376 1/1 439 505 .. 1 87 [] 45.3 9.2e-13
AE006470_0525 1/1 325 391 .. 1 87 [] 39.3 4.7e-11
AE006470_1673 1/1 169 235 .. 1 87 [] 36.3 3.3e-10
AE006470_1356 1/1 1 63 [. 5 87 .] 35.8 4.8e-10

Alignments of top-scoring domains:
AE006470_0650: domain 1 of 1, from 172 to 239: score 96.6, E = 2.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPL++I+gy+e+Lle +++++++++
AE006470_0 172 TRRDFVSSVSHELRTPLASIKGYTETLLE---------GAMNDPENA 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++eae+l +L+nd+Ldlsrie+g
AE006470_0 210 ----------TAFLNIIHQEAEQLTALVNDVLDLSRIESG 239

AE006470_2032: domain 1 of 1, from 298 to 364: score 59.5, E = 9.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt I+gyae+ l + ++ +
AE006470_2 298 TIGTLAGGIAHDFNNILTPILGYAEMGLS---------SIDEDDPI- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ i ++aer ++L++++L++s++e+g
AE006470_2 335 ----------HEYFAEIMQAAERAQKLVSQILTFSKAEEG 364

AE006470_0195: domain 1 of 1, from 224 to 289: score 53.4, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HELR PLta+++ ae L+ + s++q+
AE006470_0 224 QQRRFIADAAHELRSPLTALSLQAENLRQ----------ASSADQM- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ +er ++L +lLdl+r +a
AE006470_0 260 ----------RARLVPLQSGIERARQLTAQLLDLARVQAH 289

AE006470_1376: domain 1 of 1, from 439 to 505: score 45.3, E = 9.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L +I+g+ael+l +++l +
AE006470_1 439 LVGQLAGGIAHDFNNMLGVILGNAELALS--------SDDLEASV-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i+r+aer ++i++lL ++r ++
AE006470_1 476 ----------EENLQEIYRAAERSAEMISQLLAFARKQTA 505

AE006470_0525: domain 1 of 1, from 325 to 391: score 39.3, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L++I+g++e+ e el+++
AE006470_0 325 SIGRLAGGIAHDINNMLSTILGHTEIVIE----------ELNDKSP- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l i++++ r +Li++lL ++r ++
AE006470_0 361 ---------YVENLLNIRDSTMRAAQLIQQLLAFARKQTI 391

AE006470_1673: domain 1 of 1, from 169 to 235: score 36.3, E = 3.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++H++++ L+aI+g++el+l++ld ++ ++ +
AE006470_1 169 LVGQLASGIAHDFNNALAAIIGNTELALKKLD------PANPAVSN- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+ a r +L ++lL ++r +
AE006470_1 209 -------------ITDIHTLATRSANLTRQLLAFARKQMA 235

AE006470_1356: domain 1 of 1, from 1 to 63: score 35.8, E = 4.8e-10
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
++ +++H+L++ Lt ++gy+e+L + + + +++
AE006470_1 1 MAGGIAHDLNNLLTPVLGYSEMLSNSF--------PETDKR------ 33

ledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+++a r + L+++lL +s ++
AE006470_1 34 ------HKRIEVIHHAALRARGLVQQLLAFSSRQTL 63


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 4 0|=
-14 33 0|=====
-13 87 1|*============
-12 166 51|=======*================
-11 278 267|======================================*=
-10 384 495|======================================================= *
-9 355 512|=================================================== *
-8 355 383|=================================================== *
-7 234 241|==================================*
-6 155 139|===================*===
-5 83 76|==========*=
-4 46 40|=====*=
-3 30 21|==*==
-2 13 11|=*
-1 11 5|*=
0 8 3|*=
1 2 1|*
2 2 0|=
> 3 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 341.4086
P(chi-square) = 0

Total sequences searched: 2255

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: