Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Rickettsia conorii str. Malish 7  

Data for AE006914  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE006914.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE006914_0311 CDS_314628-316121 80.7 5.2e-23 1
AE006914_0703 CDS_677297-677695 75.7 1.4e-21 1
AE006914_0592 CDS_580320-578881 62.3 8.8e-18 1
AE006914_0948 CDS_889202-887403 50.7 1.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE006914_0311 1/1 268 333 .. 1 87 [] 80.7 5.2e-23
AE006914_0703 1/1 1 69 [. 1 87 [] 75.7 1.4e-21
AE006914_0592 1/1 272 330 .. 1 87 [] 62.3 8.8e-18
AE006914_0948 1/1 371 441 .. 1 87 [] 50.7 1.7e-14

Alignments of top-scoring domains:
AE006914_0311: domain 1 of 1, from 268 to 333: score 80.7, E = 5.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ n+sHELRTPL+aI+g++e+L + e+
AE006914_0 268 SNTKFFTNISHELRTPLNAIIGFSEILMS---------ERDAEKS-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i +++++ll++ind+Ldls++ a
AE006914_0 304 ----------KNYIKDINDAGKHLLSMINDILDLSKASAD 333

AE006914_0703: domain 1 of 1, from 1 to 69: score 75.7, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k efl+n+ HE++TPLt+I+ + e+L +++ ++ +e+qr
AE006914_0 1 MKHEFLRNINHEINTPLTGIISLGETLWANY-------DKFNEDQR- 39

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ l++Lin++Ld+s++ +
AE006914_0 40 ----------RNAVEIIAKSSIKLNSLINNILDFSKLSSL 69

AE006914_0592: domain 1 of 1, from 272 to 330: score 62.3, E = 8.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +la++sH+LRTPLt +++ +el++e +e+
AE006914_0 272 KKTTMLAMISHDLRTPLTRMKLQLELMEE-------------SEE-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++ ++++in Ld+++ e+
AE006914_0 304 -------------IEGLKQDILTMQQMINSYLDFAKGEST 330

AE006914_0948: domain 1 of 1, from 371 to 441: score 50.7, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+ + s+e +
AE006914_0 371 AWSDVAKKVAHEIKNPLTPILLASERLLK----------KFSPEIK- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ yl+ i+r ++ + ++++++ ++r+ a+
AE006914_0 407 -----ERVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 441


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 20 0|====
-13 53 1|*==========
-12 140 31|======*=====================
-11 193 162|================================*======
-10 243 302|================================================= *
-9 250 312|================================================== *
-8 159 233|================================ *
-7 117 147|======================== *
-6 93 84|================*==
-5 43 46|=========*
-4 20 24|====*
-3 16 13|==*=
-2 12 6|=*=
-1 6 3|*=
0 1 1|*
1 0 0|
2 0 0|
3 1 0|=
4 1 0|=
> 5 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 441.4814
P(chi-square) = 0

Total sequences searched: 1374

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: