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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

4 accessions found for Agrobacterium tumefaciens str. C58  

Data for AE007869  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE007869.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE007869_0966 CDS_976683-974347 98.3 1.1e-27 1
AE007869_2250 CDS_2310016-2306285 94.8 1.1e-26 1
AE007869_1828 CDS_1866983-1868518 92.3 5.4e-26 1
AE007869_0900 CDS_908629-910176 86.2 2.9e-24 1
AE007869_0408 CDS_414580-415881 82.3 3.6e-23 1
AE007869_2329 CDS_2388292-2391687 78.2 5.4e-22 1
AE007869_0600 CDS_606337-602510 76.9 1.3e-21 1
AE007869_0335 CDS_333437-335521 76.7 1.4e-21 1
AE007869_0032 CDS_36267-34477 71.6 4.1e-20 1
AE007869_0027 CDS_31471-28826 66.0 1.6e-18 1
AE007869_1411 CDS_1437951-1439099 55.1 1.9e-15 1
AE007869_0963 CDS_968501-969919 49.0 1e-13 1
AE007869_1923 CDS_1956326-1954089 47.0 3.9e-13 1
AE007869_0517 CDS_521015-517506 44.1 2.5e-12 1
AE007869_1413 CDS_1440696-1442957 43.1 4.8e-12 1
AE007869_0050 CDS_53498-52053 40.4 2.8e-11 1
AE007869_2441 CDS_2508395-2506959 38.9 7.5e-11 1
AE007869_0109 CDS_117215-119185 36.7 3.2e-10 1
AE007869_2125 CDS_2176980-2178359 35.2 8.5e-10 1
AE007869_2377 CDS_2435378-2433984 32.8 3.9e-09 1
AE007869_1329 CDS_1354918-1357503 26.9 1.9e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE007869_0966 1/1 545 614 .. 1 87 [] 98.3 1.1e-27
AE007869_2250 1/1 693 758 .. 1 87 [] 94.8 1.1e-26
AE007869_1828 1/1 261 330 .. 1 87 [] 92.3 5.4e-26
AE007869_0900 1/1 242 311 .. 1 87 [] 86.2 2.9e-24
AE007869_0408 1/1 211 278 .. 1 87 [] 82.3 3.6e-23
AE007869_2329 1/1 676 742 .. 1 87 [] 78.2 5.4e-22
AE007869_0600 1/1 1042 1111 .. 1 87 [] 76.9 1.3e-21
AE007869_0335 1/1 183 248 .. 1 87 [] 76.7 1.4e-21
AE007869_0032 1/1 357 422 .. 1 87 [] 71.6 4.1e-20
AE007869_0027 1/1 649 717 .. 1 87 [] 66.0 1.6e-18
AE007869_1411 1/1 139 203 .. 1 87 [] 55.1 1.9e-15
AE007869_0963 1/1 243 308 .. 1 87 [] 49.0 1e-13
AE007869_1923 1/1 518 585 .. 1 87 [] 47.0 3.9e-13
AE007869_0517 1/1 801 866 .. 1 87 [] 44.1 2.5e-12
AE007869_1413 1/1 508 580 .. 1 87 [] 43.1 4.8e-12
AE007869_0050 1/1 257 323 .. 1 87 [] 40.4 2.8e-11
AE007869_2441 1/1 263 321 .. 1 87 [] 38.9 7.5e-11
AE007869_0109 1/1 428 496 .. 1 87 [] 36.7 3.2e-10
AE007869_2125 1/1 256 314 .. 1 87 [] 35.2 8.5e-10
AE007869_2377 1/1 239 304 .. 1 87 [] 32.8 3.9e-09
AE007869_1329 1/1 473 539 .. 1 87 [] 26.9 1.9e-07

Alignments of top-scoring domains:
AE007869_0966: domain 1 of 1, from 545 to 614: score 98.3, E = 1.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L++e++ ++ ++++
AE007869_0 545 AKSEFLANMSHELRTPLNAILGFSEILQNEMF------GPVGSPK-- 583

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+s+ieag
AE007869_0 584 ---------YSEYARDIHDSGKHLLNVINDILDMSKIEAG 614

AE007869_2250: domain 1 of 1, from 693 to 758: score 94.8, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + ++l+ q
AE007869_2 693 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------SKLDTRQ-- 728

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+ieag
AE007869_2 729 ----------KTFTDIIVKSGNALLTIINDILDFSKIEAG 758

AE007869_1828: domain 1 of 1, from 261 to 330: score 92.3, E = 5.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ e+ ++l+ +
AE007869_1 261 AKSRFLASMSHELRTPLNAILGFSEVMSSEV------LGPLNNPL-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i+r++++ll+Lin++Ldlsrieag
AE007869_1 300 ---------YKEYSGDIHRSGQHLLDLINEILDLSRIEAG 330

AE007869_0900: domain 1 of 1, from 242 to 311: score 86.2, E = 2.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+a++g++++L e++ + l + +
AE007869_0 242 AKSRFLAAVSHELRTPLNAVLGFSDILAGEYF------GRLENDRQ- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+ i++++ +ll+ +n +Ld+s++eag
AE007869_0 282 ----------REYVGLIRQSGAHLLSVVNTMLDMSKLEAG 311

AE007869_0408: domain 1 of 1, from 211 to 278: score 82.3, E = 3.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+++ +++++++++
AE007869_0 211 MRSDFVANASHELRTPLASLRGFIETMQG---------PARNDPKAQ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++l++a r++rL++dl+ lsr+e
AE007869_0 249 ----------ERFLAIMLDQATRMSRLVDDLMSLSRLELR 278

AE007869_2329: domain 1 of 1, from 676 to 742: score 78.2, E = 5.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya++L++ d++ +++
AE007869_2 676 AKSRYVVGLSHELRTPLNAVLGYAQILER--------DETIPAPR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+r+a++l+ Li+ lLd+s+ieag
AE007869_2 713 ----------QSAIKVIRRSADHLSGLIDGLLDISKIEAG 742

AE007869_0600: domain 1 of 1, from 1042 to 1111: score 76.9, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g+++++ + + ++ + +
AE007869_0 1042 HKTDFLARVSHEIRTPLNAIIGFSDMMAT------ERFGPIGNPR-- 1080

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i r++++ l+++ndlLd+s+ieag
AE007869_0 1081 ---------YVEYANDIGRSGRHVLDIVNDLLDISKIEAG 1111

AE007869_0335: domain 1 of 1, from 183 to 248: score 76.7, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++la++sHE+R PL++++g+ +lL t+l+ eq
AE007869_0 183 EKARLLATVSHEIRLPLSGMLGMNHLLSQ---------TKLNQEQ-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ +++++++l +L++dlLd+s +eag
AE007869_0 219 ----------RNYLDGMKQSGQSLVQLVEDLLDYSTMEAG 248

AE007869_0032: domain 1 of 1, from 357 to 422: score 71.6, E = 4.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L + +++ee +
AE007869_0 357 AIESFAADVSHELKNPLTSLRSAVETLPR----------AKTEESK- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e+i ++++rl+rLi+d+ d sr++a+
AE007869_0 393 ----------QRLTEIIFHDVRRLDRLISDISDASRLDAE 422

AE007869_0027: domain 1 of 1, from 649 to 717: score 66.0, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+++lL++ +g + l+e q
AE007869_0 649 LKNDFVQHVSYELRSPLTNIIGFTDLLKT------PGIGQLTERQ-- 687

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+ i ++ ll ++nd+Ldl+ +ag
AE007869_0 688 ----------AEYLDHISTSSSVLLTIVNDILDLATVDAG 717

AE007869_1411: domain 1 of 1, from 139 to 203: score 55.1, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL++ ++e+
AE007869_1 139 SVTGLASMLAHEIKNPLSGIRGAAQLLEM----------SVPDED-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
AE007869_1 174 ----------RALTRLICDETDRIVSLVDRMEIFSDERPV 203

AE007869_0963: domain 1 of 1, from 243 to 308: score 49.0, E = 1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r a ++l+ + +e +r
AE007869_0 243 GLRQVSDNIAHDLKTPLTRLRNKAAAALD----------DNDETKR- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i+ e+++l r n lL +sr eag
AE007869_0 279 ----------RAALEGIIAESDQLIRTFNALLMISRVEAG 308

AE007869_1923: domain 1 of 1, from 518 to 585: score 47.0, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR P I g+a+lL+e++ ++l+e+
AE007869_1 518 ELEAFSYSVSHDLRAPFRHIVGFAQLLRERS-------DALDEKS-- 555

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ i ++a rL++dlL +s+++
AE007869_1 556 ----------LHYLQMISEAALGAGRLVDDLLNFSQLGRT 585

AE007869_0517: domain 1 of 1, from 801 to 866: score 44.1, E = 2.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y++ L e + +
AE007869_0 801 GKTRFFAAAGHDILQPLNAARLYSSSLVE---------RLGASGE-- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i++++e+ + ++ +Ld+sr+++g
AE007869_0 837 ----------SDLVHNIDSALESVETILGAVLDISRLDTG 866

AE007869_1413: domain 1 of 1, from 508 to 580: score 43.1, E = 4.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++PLt I++ ae +++++ ++ + ++ +
AE007869_1 508 AWSDVARRIAHEIKNPLTPIQLSAERIKRRF----GKQIDENDRAI- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti r++ + r+++++ ++r+ +
AE007869_1 550 ---------FDQCTDTIVRQVGDIGRMVDEFSAFARMPKP 580

AE007869_0050: domain 1 of 1, from 257 to 323: score 40.4, E = 2.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el+ +++
AE007869_0 257 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELGHDEK- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e + +++++er+++++++l ls ++
AE007869_0 293 ---------YGEDIALLRSQSERCRDILRRLTSLSADNEE 323

AE007869_2441: domain 1 of 1, from 263 to 321: score 38.9, E = 7.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla+++HELRTP++ +r+ a+lL +
AE007869_2 263 RRNRFLADAAHELRTPIAIVRTRADLLPD------------------ 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+ +++rl r +lL++ +a
AE007869_2 292 ----------DALSRQIRADIDRLTRVAHQLLEMQAVGAV 321

AE007869_0109: domain 1 of 1, from 428 to 496: score 36.7, E = 3.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+lsHE+++PL+a + yae + ++ + ee
AE007869_0 428 ALGQMSAALSHEFNQPLAAAKNYAENASLLVE------RGRLEEV-- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i ++r+ ++ l+ ++r ++
AE007869_0 467 ----------TENLRRISGLIDRMASISKHLRNFARKPNE 496

AE007869_2125: domain 1 of 1, from 256 to 314: score 35.2, E = 8.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT Lt ++ + l+ +
AE007869_2 256 QRTAMLNGVSHDLRTILTRFKLQLALAGD------------------ 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le ++++++ ++++++ L+++r e +
AE007869_2 285 ----------NPDLEGLDKDVDDMQSMLEAYLTFARTEVE 314

AE007869_2377: domain 1 of 1, from 239 to 304: score 32.8, E = 3.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+sH+LRTPL+ I++ + l + ++s e++
AE007869_2 239 ALRHFTGNASHQLRTPLAIISTQLALSAR----------AASLEEA- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++ + ++++ +lL ++ i+a
AE007869_2 275 ----------QAAALKGGASVAHAEHILAQLLRMANIDAA 304

AE007869_1329: domain 1 of 1, from 473 to 539: score 26.9, E = 1.9e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ LtaI++ ++ Ll ++++++
AE007869_1 473 AVGTLAGGIAHDFNNVLTAILLSSDHLLL---------QARPADPS- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i+r a+r L+++lL +sr ++
AE007869_1 510 ----------FADLMEIKRNANRAAVLVRQLLAFSRKQTM 539


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 2 0|=
-14 15 0|==
-13 30 2|*==
-12 107 62|======*====
-11 270 322|=========================== *
-10 452 598|============================================== *
-9 560 618|======================================================== *
-8 477 462|==============================================*=
-7 341 291|=============================*=====
-6 208 167|================*====
-5 106 92|=========*=
-4 47 49|====*
-3 30 26|==*
-2 25 13|=*=
-1 8 7|*
0 6 3|*
1 4 1|*
> 2 34 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 112.9242
P(chi-square) = 4.767e-19

Total sequences searched: 2722

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: