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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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4 accessions found for Agrobacterium tumefaciens str. C58  

Data for AE007870  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE007870.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE007870_1076 CDS_1196693-1199395 77.8 4.6e-22 1
AE007870_0864 CDS_943348-944652 51.3 1.5e-14 1
AE007870_0098 CDS_93769-91361 50.1 3.3e-14 1
AE007870_0129 CDS_130128-131708 49.7 4.3e-14 1
AE007870_1081 CDS_1209414-1208059 44.5 1.3e-12 1
AE007870_0588 CDS_645556-642914 42.3 5.5e-12 1
AE007870_1548 CDS_1749809-1751710 39.7 3e-11 1
AE007870_0836 CDS_914063-911088 32.9 2.5e-09 1
AE007870_0262 CDS_283961-282627 28.5 4.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE007870_1076 1/1 668 736 .. 1 87 [] 77.8 4.6e-22
AE007870_0864 1/1 216 280 .. 1 87 [] 51.3 1.5e-14
AE007870_0098 1/1 219 284 .. 1 87 [] 50.1 3.3e-14
AE007870_0129 1/1 299 369 .. 1 87 [] 49.7 4.3e-14
AE007870_1081 1/1 245 303 .. 1 87 [] 44.5 1.3e-12
AE007870_0588 1/1 655 725 .. 1 87 [] 42.3 5.5e-12
AE007870_1548 1/1 417 485 .. 1 87 [] 39.7 3e-11
AE007870_0836 1/1 470 536 .. 1 87 [] 32.9 2.5e-09
AE007870_0262 1/1 243 300 .. 1 87 [] 28.5 4.3e-08

Alignments of top-scoring domains:
AE007870_1076: domain 1 of 1, from 668 to 736: score 77.8, E = 4.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+L+TPL+aI+g a +L++++ ++ +++ r
AE007870_1 668 LRTALLTSISHDLKTPLAAILGSAGTLKDFA-------DDIPPDAR- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ti +e+erl+r i++lLd++ri++g
AE007870_1 707 ----------AELLSTIVEESERLNRFISNLLDMTRIGSG 736

AE007870_0864: domain 1 of 1, from 216 to 280: score 51.3, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +ef+an +HELRTP+++ ++ a+ L+ + ++e
AE007870_0 216 AEREFTANSAHELRTPIAGALAQAQRLRV----------DIPPEL-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e i++++++l +L + lL++sr+ea
AE007870_0 251 ----------APRVENIEKSLQHLAHLAEKLLQMSRAEAK 280

AE007870_0098: domain 1 of 1, from 219 to 284: score 50.1, E = 3.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+++sH+LR+PL +++++ lL++ +e +
AE007870_0 219 AKSRFLSAASHDLRQPLQTLKLLQGLLER----------SVGEGRA- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++++ + +++ +++ lLd+ +ieag
AE007870_0 255 ----------RTFVQRMEETLSSMSGMLDSLLDINQIEAG 284

AE007870_0129: domain 1 of 1, from 299 to 369: score 49.7, E = 4.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + a+lsHEL++PL aI+ +a++Ll++l ++++++++
AE007870_0 299 AVGAMSASLSHELNQPLGAIIVNAQTLLRWL--------DRDPPDLA 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r+ e+++r++er +++i++ + l +g
AE007870_0 338 AA--------RRSAERMIRDGERASDIIQNTRSLLAHTSG 369

AE007870_1081: domain 1 of 1, from 245 to 303: score 44.5, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ +++HELRTP++ +++ +e+Lle
AE007870_1 245 RHKRFILDAAHELRTPVAILQTRVETLLE------------------ 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++il +a r+ L ++lLdl r++ +
AE007870_1 274 ----------GPARSRILADASRIAVLAEQLLDLQRLGGQ 303

AE007870_0588: domain 1 of 1, from 655 to 725: score 42.3, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+a++ y+++++++l +e + +r+
AE007870_0 655 SLAELSASIAHEVNQPLSAVMNYSSACQRWLT------AEPPNIERA 695

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i ++a++ + +++++ l r +
AE007870_0 696 ----------QKTLERIVQSANSAADVVSRIRALFRQSTD 725

AE007870_1548: domain 1 of 1, from 417 to 485: score 39.7, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir++a+ +++ l ++ +e
AE007870_1 417 ILGQVAAGVAHEINQPVATIRAFADNARTLLK------RDRLAEA-- 455

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le i +er+ + dl l+r +
AE007870_1 456 ----------NENLEDIAALTERIGTITTDLKILARKGRT 485

AE007870_0836: domain 1 of 1, from 470 to 536: score 32.9, E = 2.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L +I g+++lL + + + e +
AE007870_0 470 SIGQLTGGVAHDFNNLLQVIAGNLQLLSK---------DVIGNERA- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le +l ++r +L ++lL + r +a
AE007870_0 507 ----------ERRLENALAGVHRGAKLASQLLAFGRRQAL 536

AE007870_0262: domain 1 of 1, from 243 to 300: score 28.5, E = 4.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fl +++HELRTP++ +++ +e L +e
AE007870_0 243 ARQRFLIDAAHELRTPIAIMQTRIEGLPG-------------PER-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ rl + ++lL ++r ++
AE007870_0 275 --------------QRLLADVARLGETAEQLLAFERNDQV 300


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 7 0|=
-13 10 1|*=
-12 48 41|=====*=
-11 155 217|======================= *
-10 278 403|======================================== *
-9 402 416|==========================================================*
-8 333 311|============================================*===
-7 230 196|===========================*=====
-6 162 113|================*=======
-5 85 62|========*====
-4 55 33|====*===
-3 24 17|==*=
-2 16 9|=*=
-1 9 4|*=
0 5 2|*
1 2 1|*
2 0 0|
> 3 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 116.7287
P(chi-square) = 2.33e-20

Total sequences searched: 1834

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: