Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Agrobacterium tumefaciens str. C58  

Data for AE007872  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE007872.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE007872_0506 CDS_503777-501678 40.9 4.1e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE007872_0506 1/1 339 405 .. 1 87 [] 40.9 4.1e-12

Alignments of top-scoring domains:
AE007872_0506: domain 1 of 1, from 339 to 405: score 40.9, E = 4.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L a++g++elL++ +l+++ ++
AE007872_0 339 AIGQLTGGVAHDFNNLLMAVLGNLELLRK----------HLTDDAKA 375

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +l+ a+r +L ++lL ++r +
AE007872_0 376 ----------TRLIDGALQGAQRGASLTQRLLAFARRQDL 405


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 4 0|==
-13 14 0|=====
-12 29 12|===*======
-11 44 64|=============== *
-10 86 120|============================= *
-9 126 124|=========================================*
-8 85 93|============================= *
-7 75 58|===================*=====
-6 40 33|==========*===
-5 18 18|=====*
-4 8 9|==*
-3 5 5|=*
-2 7 2|*==
-1 0 1|*
0 2 0|=
1 0 0|
> 2 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 45.0931
P(chi-square) = 8.868e-07

Total sequences searched: 547

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: