Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Agrobacterium tumefaciens str. C58  

Data for AE007872  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE007872.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE007872_0371 CDS_367500-368900 81.8 5.7e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE007872_0371 1/1 276 361 .. 1 94 [] 81.8 5.7e-24

Alignments of top-scoring domains:
AE007872_0371: domain 1 of 1, from 276 to 361: score 81.8, E = 5.7e-24
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRVKNN+++ +L++ ar +++ e+ + +L ++ +RV +
AE007872_0 276 ELNHRVKNNMAMLYGLINSAARESRSDEA-----RRVLGDAAQRVGA 317

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
mA ++ LY+ +d +v+ +e+l+ ++++ + +++++ L D+
AE007872_0 318 MAAAQQTLYMEKDRTRVNAREFLQAVCSSARLAFSKEVA---LHIDV 361


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 2 0|=
-14 7 0|===
-13 12 3|*===
-12 36 35|===========*
-11 140 100|=================================*=============
-10 140 129|==========================================*====
-9 88 109|============================== *
-8 51 73|================= *
-7 35 43|============ *
-6 19 24|=======*
-5 3 13|= *
-4 4 6|=*
-3 3 3|*
-2 1 1|*
-1 0 0|
0 1 0|=
1 0 0|
> 2 5 -|==


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 30.6228
P(chi-square) = 2.992e-05

Total sequences searched: 547

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: