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1 accessions found for Methanosarcina mazei Go1  

Data for AE008384  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE008384.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE008384_3101 CDS_3771733-3769586 100.9 2.5e-28 1
AE008384_3099 CDS_3767903-3765780 94.5 1.6e-26 2
AE008384_2629 CDS_3130077-3132227 94.3 1.8e-26 1
AE008384_3205 CDS_3900532-3897854 94.2 2e-26 1
AE008384_2881 CDS_3460711-3463275 91.2 1.4e-25 1
AE008384_2773 CDS_3327153-3324730 90.6 2e-25 1
AE008384_0948 CDS_1123813-1125006 86.2 3.5e-24 1
AE008384_2178 CDS_2584762-2582321 82.1 5.4e-23 1
AE008384_2518 CDS_3004238-3006346 78.2 6.7e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE008384_3101 1/1 486 554 .. 1 87 [] 100.9 2.5e-28
AE008384_2629 1/1 486 554 .. 1 87 [] 94.3 1.8e-26
AE008384_3205 1/1 345 413 .. 1 87 [] 94.2 2e-26
AE008384_3099 2/2 481 549 .. 1 87 [] 93.2 3.8e-26
AE008384_2881 1/1 281 349 .. 1 87 [] 91.2 1.4e-25
AE008384_2773 1/1 580 648 .. 1 87 [] 90.6 2e-25
AE008384_0948 1/1 150 218 .. 1 87 [] 86.2 3.5e-24
AE008384_2178 1/1 556 624 .. 1 87 [] 82.1 5.4e-23
AE008384_2518 1/1 458 526 .. 1 87 [] 78.2 6.7e-22

Alignments of top-scoring domains:
AE008384_3101: domain 1 of 1, from 486 to 554: score 100.9, E = 2.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+g+++lL e+++ +el+e+q
AE008384_3 486 TKSEFLANMSHELRTPLNSIIGFSDLLYEKVY------GELNEKQ-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i r++++ll+Lind+Ldls+ eag
AE008384_3 525 ----------ARAVGNISRSGKHLLNLINDILDLSKVEAG 554

AE008384_2629: domain 1 of 1, from 486 to 554: score 94.3, E = 1.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+g+++lL + +++++l+e+q
AE008384_2 486 TKSEFLANMSHELRTPLNSIIGFSDLLCD------QIYGKLNEKQ-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i +++++ll+Lind+Ldls+ eag
AE008384_2 525 ----------LKYTNNISKSGKHLLNLINDILDLSKVEAG 554

AE008384_3205: domain 1 of 1, from 345 to 413: score 94.2, E = 2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl n+sHELRTPLtaI+g+++++l ++++e se+
AE008384_3 345 AKSEFLTNMSHELRTPLTAIIGFSDVMLG------GISGEFSEQN-- 383

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i +++++ll Lin++Ldls+ieag
AE008384_3 384 ----------KKFLNNIANSGKHLLTLINNILDLSKIEAG 413

AE008384_3099: domain 2 of 2, from 481 to 549: score 93.2, E = 3.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL++I+g+++lL ++++ +el++ q
AE008384_3 481 AKSEFLANMSHELRTPLNSIIGFSDLLHDKVY------GELNARQ-- 519

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i ++++ll+Lin++Ldls+ eag
AE008384_3 520 ----------LKAVGNISGSGKHLLNLINEILDLSKVEAG 549

AE008384_2881: domain 1 of 1, from 281 to 349: score 91.2, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sefla++sHELRTPLtaI+g++el+l ++ +e +e
AE008384_2 281 SMSEFLATMSHELRTPLTAIIGFSELMLG------GSTGEFDELN-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i ++++ll+Lin +Ldls+ieag
AE008384_2 320 ----------KKFLGNISTSGKHLLSLINSILDLSKIEAG 349

AE008384_2773: domain 1 of 1, from 580 to 648: score 90.6, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+g++++L e+++ +el+ +q
AE008384_2 580 TKSEFLANMSHELRTPLNSIIGFSDMLYEQAY------GELNQKQ-- 618

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i +++++ll+Lin +Ldls+iea+
AE008384_2 619 ----------LRAISNISNSGKHLLNLINGILDLSKIEAN 648

AE008384_0948: domain 1 of 1, from 150 to 218: score 86.2, E = 3.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+ n+sHELRTPL++++g+++lLle+++ ++++ +q
AE008384_0 150 AKNSFIMNMSHELRTPLNSVIGFSDLLLEGAF------GPMNTKQ-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ il +++ ll++in+lLd+sr+eag
AE008384_0 189 ----------SKYVNNILISGKNLLEIINNLLDISRLEAG 218

AE008384_2178: domain 1 of 1, from 556 to 624: score 82.1, E = 5.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+ n+sHELRTPL+a++g+++lLl e ++l+e+q
AE008384_2 556 AKTTFIVNMSHELRTPLNAVIGFSDLLLSET------VGPLNEKQ-- 594

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e i +++++ll+ ind+Ld+s++e g
AE008384_2 595 ----------KRYTENISKSGNHLLDVINDVLDISKLELG 624

AE008384_2518: domain 1 of 1, from 458 to 526: score 78.2, E = 6.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefl n+sHEL+TPL++I+g+++lL e ++ ++l+e+q
AE008384_2 458 TKSEFLTNMSHELKTPLNSIIGFSDLLIE------GIAGPLNEKQ-- 496

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y i + ++ ll++in +L+ls+ e++
AE008384_2 497 ----------SRYAGFISSNGKNLLNIINGILELSKVESE 526


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 18 0|==
-13 68 2|*======
-12 216 77|======*=============
-11 424 399|====================================*==
-10 633 741|==========================================================*
-9 636 765|==========================================================*
-8 513 573|=============================================== *
-7 350 361|================================*
-6 203 207|==================*
-5 127 114|==========*=
-4 76 61|=====*=
-3 36 32|==*=
-2 31 16|=*=
-1 12 8|*=
0 11 4|*
1 4 2|*
2 2 1|*
3 1 0|=
> 4 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 315.0579
P(chi-square) = 0

Total sequences searched: 3371

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: