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1 accessions found for Zymomonas mobilis subsp. mobilis ZM4  

Data for AE008692  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE008692.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE008692_1162 CDS_1177232-1178497 78.1 4.4e-22 1
AE008692_1102 CDS_1119387-1117378 75.6 2.2e-21 1
AE008692_1323 CDS_1339998-1341635 58.5 1.5e-16 1
AE008692_1125 CDS_1143111-1140805 52.9 5.8e-15 1
AE008692_1175 CDS_1195608-1194586 47.5 1.9e-13 1
AE008692_0601 CDS_598187-600622 43.5 2.8e-12 1
AE008692_1105 CDS_1122377-1120062 39.3 4.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE008692_1162 1/1 190 258 .. 1 87 [] 78.1 4.4e-22
AE008692_1102 1/1 432 500 .. 1 87 [] 75.6 2.2e-21
AE008692_1323 1/1 308 373 .. 1 87 [] 58.5 1.5e-16
AE008692_1125 1/1 517 588 .. 1 87 [] 52.9 5.8e-15
AE008692_1175 1/1 107 165 .. 1 87 [] 47.5 1.9e-13
AE008692_0601 1/1 436 502 .. 1 87 [] 43.5 2.8e-12
AE008692_1105 1/1 542 609 .. 1 87 [] 39.3 4.1e-11

Alignments of top-scoring domains:
AE008692_1162: domain 1 of 1, from 190 to 258: score 78.1, E = 4.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+an sHELRTPL++++g++e+L++ d+ e +++
AE008692_1 190 VRIDFVANTSHELRTPLATLSGFIETLED--------DDVIKERDTR 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++ rea+r+++L++dl+ lsrieag
AE008692_1 229 ----------HHFLSIMAREAKRMQNLVDDLMSLSRIEAG 258

AE008692_1102: domain 1 of 1, from 432 to 500: score 75.6, E = 2.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+s ELRTPLt+I+g+ae+L ++ + q++
AE008692_1 432 LKTDFVANMSYELRTPLTSISGFAEMLAQGY--------CGDLSQMA 470

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ il+++ rl+ Li+d+Ldl+ +e+g
AE008692_1 471 ----------NDYVAAILDAVARLSTLIDDILDLTLLESG 500

AE008692_1323: domain 1 of 1, from 308 to 373: score 58.5, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++ HEL++PL+++r +++ L++ +++ r
AE008692_1 308 ATEAFAADVTHELKNPLASLRSAVDSLEM----------IKDDHLR- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+++++rl+rLi d+ + sr +a+
AE008692_1 344 ----------QQLIGVIRDDIQRLDRLITDISEASRVDAE 373

AE008692_1125: domain 1 of 1, from 517 to 588: score 52.9, E = 5.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I+++ae L++++ g++ s+e++
AE008692_1 517 AWADVARRIAHEIKNPLTPIQLAAERLQRRY-----GRQITSDEET- 557

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ti r++ l+r+++++ ++r+ +
AE008692_1 558 ---------FSRLTSTIVRQVGDLRRMVDEFSSFARMPKP 588

AE008692_1175: domain 1 of 1, from 107 to 165: score 47.5, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+la++sH+LRTPL+ +++ a+ ++e
AE008692_1 107 ERTEMLAAVSHDLRTPLARLQLRASFIEE------------------ 135

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ +++ + +i +L++ r ++
AE008692_1 136 ----------DDIREAVEADLQEMATMIKSVLQFLRGDQD 165

AE008692_0601: domain 1 of 1, from 436 to 502: score 43.5, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+gy++++++ ++ ++ +
AE008692_0 436 AIGQLAGGVAHDFNNILTAIIGYCDVMRM--------RHVPGDSD-- 472

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++ ++r +L ++lL +sr ++
AE008692_0 473 ----------YDDIQQIRHNSNRAAALTRQLLAFSRQQTM 502

AE008692_1105: domain 1 of 1, from 542 to 609: score 39.3, E = 4.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+ l HELR+PL+aI g+ae+++ + l++ +
AE008692_1 542 IDRDSLRQLMHELRNPLNAIVGFAEMIEH---------QMLGPVGK- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr y i r+++rll+ ++d L l+ e++
AE008692_1 579 --------SYRYYAADITRQGQRLLQAVDD-LNLAAEESE 609


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 33 0|=====
-13 64 1|*=========
-12 133 45|======*============
-11 200 236|============================= *
-10 295 439|=========================================== *
-9 388 453|======================================================== *
-8 324 339|=============================================== *
-7 222 214|==============================*=
-6 141 123|=================*===
-5 76 67|=========*=
-4 51 36|=====*==
-3 25 19|==*=
-2 12 10|=*
-1 12 5|*=
0 4 2|*
1 4 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
6 2 0|=
7 0 0|
8 2 0|=
9 0 0|
10 0 0|
> 11 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 251.3595
P(chi-square) = 0

Total sequences searched: 1998

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

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