hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE008917.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE008917_0369 CDS_380068-379274 95.8 2.4e-27 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE008917_0369 1/1 46 133 .. 1 94 [] 95.8 2.4e-27
Alignments of top-scoring domains:
AE008917_0369: domain 1 of 1, from 46 to 133: score 95.8, E = 2.4e-27
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
+HR+ N+L+++SSLL LQ r+++de++ ++aL +++RV++
AE008917_0 46 DTNHRIGNSLATVSSLLGLQMRQTQDENA-----RAALVAARDRVQT 87
mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+++ H++L +ed++t ++e+l+ ++++++++ g+++d i+++ D
AE008917_0 88 VSTAHRRLRLGEDMETARVDEFLQSVIGDIRSAIGHDRD-IRFETDF 133
Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 4 0|=
-14 9 0|=
-13 46 12|=*===
-12 129 135|=============*
-11 544 376|=====================================*=================
-10 480 487|================================================*
-9 326 411|================================= *
-8 192 276|==================== *
-7 131 163|============== *
-6 103 91|=========*=
-5 43 49|====*
-4 23 26|==*
-3 14 13|=*
-2 8 7|*
-1 5 3|*
> 0 2 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 212.6796
P(chi-square) = 3.267e-309
Total sequences searched: 2059
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
