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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Brucella melitensis bv. 1 str. 16M  

Data for AE008918  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE008918.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE008918_1016 CDS_1053312-1054655 44.9 6.2e-13 1
AE008918_0793 CDS_828568-829992 35.6 2.7e-10 1
AE008918_0052 CDS_54538-53471 33.4 1.1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE008918_1016 1/1 228 293 .. 1 87 [] 44.9 6.2e-13
AE008918_0793 1/1 264 322 .. 1 87 [] 35.6 2.7e-10
AE008918_0052 1/1 128 198 .. 1 87 [] 33.4 1.1e-09

Alignments of top-scoring domains:
AE008918_1016: domain 1 of 1, from 228 to 293: score 44.9, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + ++++
AE008918_1 228 AERSFTANSAHELRTPIAAALAQTQRLIA---------ETQDKAA-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+ +++rl+rL + l++l+++e g
AE008918_1 264 ----------RDRGEQIEAALHRLSRLSEKLMQLAKAEGG 293

AE008918_0793: domain 1 of 1, from 264 to 322: score 35.6, E = 2.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+LRTPLt +++ elL +
AE008918_0 264 EREQLAAALAHDLRTPLTRMKLRMELLDD------------------ 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ r+++ ++++ + + d++ e
AE008918_0 293 ----------DALRQSLSRDLNDIEAISRSVIDFATSELA 322

AE008918_0052: domain 1 of 1, from 128 to 198: score 33.4, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++HE +PL aI a++ +++l a++++ +e
AE008918_0 128 TLGQLTSSIAHEVSQPLVAIEISASAGRRWL----AQSPPNNERA-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i +++r +++++++ lsr e +
AE008918_0 169 ----------AAAIERISVDSHRAIEILDRVRRLSRGEKP 198


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 5 0|=
-13 11 0|===
-12 59 26|=====*======
-11 100 135|==================== *
-10 175 250|=================================== *
-9 247 258|================================================== *
-8 193 193|======================================*
-7 149 122|========================*=====
-6 91 70|=============*=====
-5 41 38|=======*=
-4 28 20|===*==
-3 18 10|=*==
-2 10 5|*=
-1 3 2|*
0 3 1|*
1 1 0|=
2 1 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 96.8417
P(chi-square) = 2.331e-16

Total sequences searched: 1139

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: