Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Xanthomonas axonopodis pv. citri str. 306  

Data for AE008923  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE008923.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE008923_1848 CDS_2179302-2181479 93.6 3.6e-26 1
AE008923_2451 CDS_2903998-2908092 91.9 1.1e-25 1
AE008923_1261 CDS_1470015-1466809 90.0 3.9e-25 1
AE008923_2981 CDS_3540412-3536735 88.0 1.5e-24 1
AE008923_2982 CDS_3544238-3540669 86.9 2.9e-24 1
AE008923_2984 CDS_3549030-3545455 84.1 1.8e-23 1
AE008923_0491 CDS_582340-580031 82.8 4.3e-23 1
AE008923_1032 CDS_1203347-1202004 80.7 1.7e-22 1
AE008923_1252 CDS_1455033-1456439 78.0 9.5e-22 1
AE008923_3201 CDS_3831432-3830275 75.6 4.6e-21 1
AE008923_0893 CDS_1060458-1058548 74.8 7.8e-21 1
AE008923_3189 CDS_3812778-3814391 72.0 5e-20 1
AE008923_3624 CDS_4350149-4351885 64.7 5.8e-18 1
AE008923_3919 CDS_4669041-4670450 64.6 6.2e-18 1
AE008923_2024 CDS_2402730-2399347 63.8 1e-17 1
AE008923_0756 CDS_901254-903914 63.7 1.1e-17 1
AE008923_4136 CDS_4934705-4931253 63.6 1.2e-17 1
AE008923_3634 CDS_4361943-4360048 62.0 3.3e-17 1
AE008923_0326 CDS_388400-387021 59.3 2e-16 1
AE008923_0831 CDS_996163-997434 58.3 3.6e-16 1
AE008923_2807 CDS_3347595-3346147 55.8 1.9e-15 1
AE008923_1258 CDS_1465410-1464280 54.4 4.7e-15 1
AE008923_0207 CDS_254630-255685 54.3 4.9e-15 1
AE008923_3424 CDS_4104169-4106811 52.6 1.5e-14 1
AE008923_2757 CDS_3287394-3288587 52.1 2.1e-14 1
AE008923_3433 CDS_4115962-4114577 49.4 1.2e-13 1
AE008923_1202 CDS_1401768-1403057 48.2 2.8e-13 1
AE008923_0680 CDS_808727-810586 46.6 7.9e-13 1
AE008923_0225 CDS_272967-274409 43.2 6.9e-12 1
AE008923_1644 CDS_1925794-1927824 41.7 1.9e-11 1
AE008923_2110 CDS_2508342-2509715 41.6 2e-11 1
AE008923_1647 CDS_1930088-1932160 35.6 1e-09 1
AE008923_1262 CDS_1469906-1471306 32.9 6e-09 1
AE008923_4226 CDS_5059882-5061138 31.2 1.8e-08 1
AE008923_0726 CDS_870651-869137 30.6 2.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE008923_1848 1/1 189 254 .. 1 87 [] 93.6 3.6e-26
AE008923_2451 1/1 643 708 .. 1 87 [] 91.9 1.1e-25
AE008923_1261 1/1 376 444 .. 1 87 [] 90.0 3.9e-25
AE008923_2981 1/1 854 919 .. 1 87 [] 88.0 1.5e-24
AE008923_2982 1/1 823 888 .. 1 87 [] 86.9 2.9e-24
AE008923_2984 1/1 810 875 .. 1 87 [] 84.1 1.8e-23
AE008923_0491 1/1 110 175 .. 1 87 [] 82.8 4.3e-23
AE008923_1032 1/1 214 278 .. 1 87 [] 80.7 1.7e-22
AE008923_1252 1/1 234 302 .. 1 87 [] 78.0 9.5e-22
AE008923_3201 1/1 176 242 .. 1 87 [] 75.6 4.6e-21
AE008923_0893 1/1 275 340 .. 1 87 [] 74.8 7.8e-21
AE008923_3189 1/1 315 381 .. 1 87 [] 72.0 5e-20
AE008923_3624 1/1 205 270 .. 1 87 [] 64.7 5.8e-18
AE008923_3919 1/1 241 306 .. 1 87 [] 64.6 6.2e-18
AE008923_2024 1/1 746 812 .. 1 87 [] 63.8 1e-17
AE008923_0756 1/1 652 720 .. 1 87 [] 63.7 1.1e-17
AE008923_4136 1/1 784 850 .. 1 87 [] 63.6 1.2e-17
AE008923_3634 1/1 251 317 .. 1 87 [] 62.0 3.3e-17
AE008923_0326 1/1 236 300 .. 1 87 [] 59.3 2e-16
AE008923_0831 1/1 213 279 .. 1 87 [] 58.3 3.6e-16
AE008923_2807 1/1 258 323 .. 1 87 [] 55.8 1.9e-15
AE008923_1258 1/1 158 224 .. 1 87 [] 54.4 4.7e-15
AE008923_0207 1/1 122 181 .. 1 79 [. 54.3 4.9e-15
AE008923_3424 1/1 515 580 .. 1 87 [] 52.6 1.5e-14
AE008923_2757 1/1 176 240 .. 1 87 [] 52.1 2.1e-14
AE008923_3433 1/1 242 307 .. 1 87 [] 49.4 1.2e-13
AE008923_1202 1/1 212 278 .. 1 87 [] 48.2 2.8e-13
AE008923_0680 1/1 384 452 .. 1 87 [] 46.6 7.9e-13
AE008923_0225 1/1 268 334 .. 1 87 [] 43.2 6.9e-12
AE008923_1644 1/1 300 368 .. 1 87 [] 41.7 1.9e-11
AE008923_2110 1/1 230 300 .. 1 87 [] 41.6 2e-11
AE008923_1647 1/1 316 384 .. 1 87 [] 35.6 1e-09
AE008923_1262 1/1 234 300 .. 1 87 [] 32.9 6e-09
AE008923_4226 1/1 186 251 .. 1 87 [] 31.2 1.8e-08
AE008923_0726 1/1 296 353 .. 1 87 [] 30.6 2.6e-08

Alignments of top-scoring domains:
AE008923_1848: domain 1 of 1, from 189 to 254: score 93.6, E = 3.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t +++eq
AE008923_1 189 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRMDSEQ-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ti+ ++++ll+L++++Ld+s ieag
AE008923_1 225 ----------RECLKTIQASTRSLLALVEEVLDISAIEAG 254

AE008923_2451: domain 1 of 1, from 643 to 708: score 91.9, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++ lL++ +el+
AE008923_2 643 SKSDFLANMSHEIRTPMNAILGMLYLLQR---------SELPGAA-- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a+ ll++ind+Ld+s+ieag
AE008923_2 679 ----------QDMVAKIDRSARTLLEIINDILDFSKIEAG 708

AE008923_1261: domain 1 of 1, from 376 to 444: score 90.0, E = 3.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL + +d++ls+eq
AE008923_1 376 YKSEFLANMSHELRTPLNSALILAKLLAD------NKDGTLSAEQ-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + il++ + ll+Lind+Ldls+ieag
AE008923_1 415 ----------VKYAQAILSSNNDLLALINDILDLSKIEAG 444

AE008923_2981: domain 1 of 1, from 854 to 919: score 88.0, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t++++ q
AE008923_2 854 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TTQDPTQ-- 889

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
AE008923_2 890 ----------RSYTESIRRAGAHLLRLVNDALDLARIESG 919

AE008923_2982: domain 1 of 1, from 823 to 888: score 86.9, E = 2.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t l+ +q
AE008923_2 823 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TSLDIKQ-- 858

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
AE008923_2 859 ----------RSYTESIRRAGAHLLRLVNDALDLARIESG 888

AE008923_2984: domain 1 of 1, from 810 to 875: score 84.1, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl t+l+ q
AE008923_2 810 AKTRFLATLGHEVRTPMTGVLGMSELLLQ---------TPLDGRQ-- 845

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i+ ++++llrL+nd Ldl+rieag
AE008923_2 846 ----------QGYASAIQLAGKHLLRLVNDALDLARIEAG 875

AE008923_0491: domain 1 of 1, from 110 to 175: score 82.8, E = 4.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+ ++el+ + ls +q
AE008923_0 110 AKGEFLATMSHEIRTPLNGIIPMLELISS---------GQLSLDQ-- 145

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+ ++ +llr+++d+Ld+s++ea+
AE008923_0 146 ----------RDMLQTATGSSLQLLRIVDDILDYSKLEAN 175

AE008923_1032: domain 1 of 1, from 214 to 278: score 80.7, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+++L ++ ++
AE008923_1 214 VRRDFVANVSHELRTPLTVVHGYLDMLDP---------EDFPDSG-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++++r+ +L++dlL+lsr+e++
AE008923_1 250 -----------PMLAEMRKQSQRMAQLVEDLLTLSRLESQ 278

AE008923_1252: domain 1 of 1, from 234 to 302: score 78.0, E = 9.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHE+RTPL +I+ + lL++++d ++l++eq
AE008923_1 234 LKSRFLSYMSHEFRTPLGSILSITRLLEDGMD------GPLNAEQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +a+ l ++++dlLdl++ieag
AE008923_1 273 ----------LKQVRFVSGSARELTEMVDDLLDLAKIEAG 302

AE008923_3201: domain 1 of 1, from 176 to 242: score 75.6, E = 4.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ ++l+e+
AE008923_3 176 RDREFNADVSHELRTPLAVIRGATELLLT--------KPNLDEKV-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ +++++Li lL lsr e g
AE008923_3 213 ----------LQRLQRIQRAEQQCSDLIGSLLLLSRNERG 242

AE008923_0893: domain 1 of 1, from 275 to 340: score 74.8, E = 7.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+ sHELRTPL+aI+gya++L++ +l+e+ +
AE008923_0 275 AKTEFLSRSSHELRTPLNAILGYAQVLEM----------DLPEPGH- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ il ++++ll Li +lLd++riea
AE008923_0 311 ----------RRHLRHILGAGRHLLGLITELLDIARIEAD 340

AE008923_3189: domain 1 of 1, from 315 to 381: score 72.0, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PL+aI+ +++lL+e +++ ++ +
AE008923_3 315 AMGRFSASLAHEIRNPLAAISYASQLLEE--------SPDIGDAD-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+++ +r + +++ +L l+r e
AE008923_3 352 ----------RRLLQIIHQQCQRTNGIVESVLALARRERA 381

AE008923_3624: domain 1 of 1, from 205 to 270: score 64.7, E = 5.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s f++++sHELRTPL+a++ a+l+++ + ++++q
AE008923_3 205 AQSHFISTMSHELRTPLNAVINCAQLIET---------EQMPAQQ-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+++ a l++ +n++Ld + i+ g
AE008923_3 241 ----------RELLQSVTANATALRHRVNEVLDVASIDGG 270

AE008923_3919: domain 1 of 1, from 241 to 306: score 64.6, E = 6.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTPL+a+ +yae++l+ ++l++++
AE008923_3 241 AERDFVADAAHELRTPLSALHAYAEVALR--------APTLDAKD-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ +l+ a+r +rL ++lLdl+r++ag
AE008923_3 278 -----------AALRQLLETARRSNRLAEQLLDLARLDAG 306

AE008923_2024: domain 1 of 1, from 746 to 812: score 63.8, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g + l++ + +++ +
AE008923_2 746 VKDEFLATLSHELRTPLNAILGWSRLMQS---------DIADPANL- 782

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r+a+ ++i+dlLd+s i +g
AE008923_2 783 ----------GRGLVIIERSARAQTQIIDDLLDMSAILSG 812

AE008923_0756: domain 1 of 1, from 652 to 720: score 63.7, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g a+ L ++ +++++ +r
AE008923_0 652 LRSALLSSVSHDLRSPLASMIGSASSLASYG-------DAMDAHDR- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti+ e+erl+r i++lLd++r+++
AE008923_0 691 ----------HSLLDTIQLEGERLDRYIQNLLDMTRLGHT 720

AE008923_4136: domain 1 of 1, from 784 to 850: score 63.6, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a r++a++L+e ++++ e++
AE008923_4 784 SKTRFLAAISHDVLQPLNAARLFASALRE---------SHQNNEEQ- 820

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ +++ ++L++ lLd sr++ag
AE008923_4 821 ----------RHLAERVDASLRAAEELLDGLLDVSRLDAG 850

AE008923_3634: domain 1 of 1, from 251 to 317: score 62.0, E = 3.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPLt+I+g +elLl +++ + ++ +
AE008923_3 251 LKDEFLATLSHELRTPLTTILGWSELLLQRVE------EGQPYYKG- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
AE008923_3 291 -------------LSVIASSARAQKRLISDMLDLSSMLLG 317

AE008923_0326: domain 1 of 1, from 236 to 300: score 59.3, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a++sHELRTPL+++r+ +e+L++ + ++
AE008923_0 236 ARRDFMADISHELRTPLAVLRAELEALQD---------GIRPMTP-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++++ +l +Li+dl d s + g
AE008923_0 272 -----------NSLGSLHQQVGQLGKLIEDLYDVSLTDVG 300

AE008923_0831: domain 1 of 1, from 213 to 279: score 58.3, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+Ir +++++l+ d+els+ +
AE008923_0 213 RERNFTRDASHELRTPLTVIRVASDMALA--------DDELSART-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r+++ +++ i+ +L l+r +
AE008923_0 250 ----------QRSLRRIQRAGHDMEAVIDAFLILAREAEI 279

AE008923_2807: domain 1 of 1, from 258 to 323: score 55.8, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HE++ PL+aIrg++elL e +l+e +r
AE008923_2 258 YVEQYVQSLTHEMKSPLAAIRGASELLAE----------PLPEADR- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ti+ + +rl + i+ lL l+ e+
AE008923_2 294 ----------QHFVATIRAQERRLTETIDKLLALAEVEQH 323

AE008923_1258: domain 1 of 1, from 158 to 224: score 54.4, E = 4.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a l H+LRTPL++I++ a+ L ++ ++++
AE008923_1 158 LNETMMAVLTHDLRTPLSVILLCADKLGLDV--------DADSSA-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le ++++a+r++r++++lLd+sr+++
AE008923_1 195 ----------ARTLEHLENSAHRMSRMVEQLLDFSRLRTD 224

AE008923_0207: domain 1 of 1, from 122 to 181: score 54.3, E = 4.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s l +l+HELR+PL++++g+a+lL +++ + ++e++
AE008923_0 122 ALSAALKGLAHELRNPLAGLKGAAQLLARRA-------AGRDEDE-- 159

peLRledpeyreyletilreaerllrLindlL<-*
re++e i e+erl+ L+++lL
AE008923_0 160 ----------RELIELIGTEIERLNTLLERLL 181

AE008923_3424: domain 1 of 1, from 515 to 580: score 52.6, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++++L+ + + +
AE008923_3 515 YKTRFVASAVHDLLQPLNAARMFVSVLRG---------QVREAGS-- 550

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ ++ ++++n lLd+sr+eag
AE008923_3 551 ----------ARVVDNIDGALAAQDAILNSLLDISRLEAG 580

AE008923_2757: domain 1 of 1, from 176 to 240: score 52.1, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+l+HELRTPL+a +g ++ +l++++ ++ +eq
AE008923_2 176 ELRDSSAMLAHELRTPLNAAMGRVQGMLDDVF-------PREPEQ-- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r++e+++rLi dl s ++ag
AE008923_2 214 -------------LRLVHRQLEQINRLIGDLHLVSLARAG 240

AE008923_3433: domain 1 of 1, from 242 to 307: score 49.4, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a ++H++RTPL+a+r+ a+l+ + + ++ ++
AE008923_3 242 TLRAFMAEAAHQMRTPLAALRAQAQLAMD----------DDDPREM- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+r a +++rL+n+lL + +
AE008923_3 278 ----------QRSLVAIERNASHMSRLLNQLLSDASVIHR 307

AE008923_1202: domain 1 of 1, from 212 to 278: score 48.2, E = 2.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTP+++I ++el+l+ ++ +++ +
AE008923_1 212 RERAFIDSASHELRTPIAVIGNAVELALD---------QPGTPPAV- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + + + ++Li lL l++
AE008923_1 249 ----------RHQLQRIAQTSTSVEQLITLLLVLAKDPGR 278

AE008923_0680: domain 1 of 1, from 384 to 452: score 46.6, E = 7.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL + g+++ L + + ++ +e+
AE008923_0 384 ELEAFSYSVSHDLRAPLRHVAGFSDKLAR-------HLGDTADEKS- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+i ++a+r+ +Li+dlL +sr++ g
AE008923_0 423 ----------RHYMEVISSSARRMASLIDDLLVYSRLGRG 452

AE008923_0225: domain 1 of 1, from 268 to 334: score 43.2, E = 6.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+P++++r+++e + ++++++++
AE008923_0 268 ALGRMTATVAHEIRNPIATMRLALENEIA--------RGDATPDD-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l +++rl+ ++ lL + +
AE008923_0 305 ----------AAHGELMLGQIRRLDGVVESLLGMVQPIRL 334

AE008923_1644: domain 1 of 1, from 300 to 368: score 41.7, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ LtaI+ +elL++ + e++ +rl
AE008923_1 300 AVGQLTGGLAHDFNNLLTAISVGLELLQT--------RIEQGKYDRL 338

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e ++++a r +L ++lL +sr ++
AE008923_1 339 ----------ERYVEMAQSSAARATALTQRLLAFSRRQTL 368

AE008923_2110: domain 1 of 1, from 230 to 300: score 41.6, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++++++HE ++PL+aI + +++++l ++ ++ ++
AE008923_2 230 SMGGLASSIAHEVNQPLAAIVTSGNACQRWL--------AQQPPNLA 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +le++l +a r +++i +++ l+r ea
AE008923_2 269 KA--------AAALERMLADAGRASAIIARMRALARGEAS 300

AE008923_1647: domain 1 of 1, from 316 to 384: score 35.6, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ +++l++ + d + ++e
AE008923_1 316 AVGQLTGGIAHDFNNMLTGILSALDLARLRID------QGRTEGL-- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ +a r +L ++lL +sr ++
AE008923_1 355 ----------GRFLDVASASALRAAALTQRLLAFSRRQSL 384

AE008923_1262: domain 1 of 1, from 234 to 300: score 32.9, E = 6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt++ + ++l+ ++ ++ +
AE008923_1 234 ALGRLTLGMAHDFNNLLTVMVTSLDLIAL--------RAGEDART-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+++ +++r L ++lL ++r ++
AE008923_1 271 ----------RMLIEVAQTAVDRGTLLTRQLLAFARGQQL 300

AE008923_4226: domain 1 of 1, from 186 to 251: score 31.2, E = 1.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ l H+LR+PL ++ + +++L + l+
AE008923_4 186 LREEFIGILGHDLRNPLQSMHAVVDMLSI---------DQLNHRY-- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++r+++r+++Li+ d++r +
AE008923_4 222 ----------GSSIRSLQRSLRRMEELIDFACDFARGIEL 251

AE008923_0726: domain 1 of 1, from 296 to 353: score 30.6, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H+LRTPL+ +++ ++ L+
AE008923_0 296 ERTHMVAAIAHDLRTPLARLSFRLDGLQP------------------ 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l +++ + ++i+ Ld+ + +
AE008923_0 325 -----------PLRDKALADINEMKAMISAALDFIQNDRH 353


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 8 0|=
-13 43 3|*===
-12 168 98|======*=====
-11 348 511|========================= *
-10 723 948|==================================================== *
-9 817 979|==========================================================*
-8 746 733|====================================================*=
-7 600 462|================================*==========
-6 337 265|==================*======
-5 199 145|==========*====
-4 127 78|=====*====
-3 63 41|==*==
-2 34 21|=*=
-1 28 11|*=
0 11 5|*
1 6 3|*
2 4 1|*
3 0 0|
4 0 0|
5 1 0|=
6 1 0|=
> 7 46 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 339.4208
P(chi-square) = 0

Total sequences searched: 4312

Whole sequence top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: