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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Xylella fastidiosa Temecula1  

Data for AE009442  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE009442.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE009442_0378 CDS_497304-499295 96.4 2.8e-27 1
AE009442_0541 CDS_704664-708236 85.2 4.1e-24 1
AE009442_1890 CDS_2317078-2315738 83.3 1.4e-23 1
AE009442_1842 CDS_2252003-2253340 74.4 4.8e-21 1
AE009442_1851 CDS_2264828-2263218 70.2 7.7e-20 1
AE009442_1747 CDS_2127103-2125604 58.0 2.2e-16 1
AE009442_0973 CDS_1218042-1219097 53.6 3.9e-15 1
AE009442_0244 CDS_337569-338942 40.3 2.3e-11 1
AE009442_0247 CDS_342854-341217 39.2 4.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE009442_0378 1/1 135 200 .. 1 87 [] 96.4 2.8e-27
AE009442_0541 1/1 812 877 .. 1 87 [] 85.2 4.1e-24
AE009442_1890 1/1 214 278 .. 1 87 [] 83.3 1.4e-23
AE009442_1842 1/1 236 302 .. 1 87 [] 74.4 4.8e-21
AE009442_1851 1/1 314 380 .. 1 87 [] 70.2 7.7e-20
AE009442_1747 1/1 250 316 .. 1 87 [] 58.0 2.2e-16
AE009442_0973 1/1 122 189 .. 1 87 [] 53.6 3.9e-15
AE009442_0244 1/1 242 307 .. 1 87 [] 40.3 2.3e-11
AE009442_0247 1/1 179 244 .. 1 87 [] 39.2 4.7e-11

Alignments of top-scoring domains:
AE009442_0378: domain 1 of 1, from 135 to 200: score 96.4, E = 2.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l++eq
AE009442_0 135 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDAEQ-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ i+ ++++ l+Li+++Ld+srieag
AE009442_0 171 ----------RECLKAIQASVHSVLSLIEEVLDISRIEAG 200

AE009442_0541: domain 1 of 1, from 812 to 877: score 85.2, E = 4.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLle t+l+ q
AE009442_0 812 AKTQFLATLGHEVRTPMTGVLGMSELLLE---------TPLDTRQ-- 847

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +i+ ++++llrL+nd Ldl++ieag
AE009442_0 848 ----------HGYATSIQAAGKHLLRLVNDALDLAKIEAG 877

AE009442_1890: domain 1 of 1, from 214 to 278: score 83.3, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHELRTPLt++ gy+++L ++ ++
AE009442_1 214 VKRDFVANVSHELRTPLTVVHGYLDMLDP---------DDFPDAA-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++++++r+ +L++dlL+lsr+e++
AE009442_1 250 -----------PMLDEMRKQSQRMTQLVEDLLTLSRLESQ 278

AE009442_1842: domain 1 of 1, from 236 to 302: score 74.4, E = 4.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ +e++++
AE009442_1 236 RDREFNADVSHELRTPLAVIRGATELLLT--------KPEMDPKI-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+r+ +++++Li lL lsr e g
AE009442_1 273 ----------QQRIRRIQRAEQQCSDLIGALLLLSRNERG 302

AE009442_1851: domain 1 of 1, from 314 to 380: score 70.2, E = 7.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PL+aI+ +++lL+e +++l+ +
AE009442_1 314 ALGRFSASLAHEIRNPLAAIKHASQLLEE--------SSNLDKGD-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++il++ +r + +++ +L l+r e
AE009442_1 351 ----------QRLLDIILKQCQRTNGIVESVLGLARRERA 380

AE009442_1747: domain 1 of 1, from 250 to 316: score 58.0, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl++lsHELRTPLt+I+g +elLl + + + + +
AE009442_1 250 LKDEFLSTLSHELRTPLTTILGWSELLLQRIE------EQHPCYKG- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
AE009442_1 290 -------------LSVIASSAKVQKRLISDMLDLSSMLLG 316

AE009442_0973: domain 1 of 1, from 122 to 189: score 53.6, E = 3.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s + +l+HELR+PL++++g+a+lL +++ +++ e+
AE009442_0 122 ALSAAFKGLAHELRNPLSGLKGAAQLLARRV-------KHRDQEE-- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i e+erl+ L+++lL + ++
AE009442_0 160 ----------CDLVELIGAEIERLNTLLERLLFSAPARPH 189

AE009442_0244: domain 1 of 1, from 242 to 307: score 40.3, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++H++RTPL+a+r+ a+l+le e ++ q+
AE009442_0 242 TLRAFMGEAAHQMRTPLAALRAQAQLALE----------EGDAFQL- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i+r a +++rL+n+lL + + +
AE009442_0 278 ----------RCSLTAIERNASHMSRLLNQLLSDASAIHR 307

AE009442_0247: domain 1 of 1, from 179 to 244: score 39.2, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++ +L++ + + +
AE009442_0 179 YKTRFIASAVHDLLQPLNAARMFVAMLRK---------QLHDTDA-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+ ++ +++++ lLd+sr+e+g
AE009442_0 215 ----------LRIANNIDGALIAEDAILSSLLDISRLESG 244


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 7 0|=
-13 26 1|*===
-12 109 46|======*=========
-11 201 241|============================= *
-10 333 447|================================================ *
-9 376 461|====================================================== *
-8 328 345|=============================================== *
-7 243 217|==============================*====
-6 170 125|=================*=======
-5 94 68|=========*====
-4 50 36|=====*==
-3 35 19|==*==
-2 25 10|=*==
-1 9 5|*=
0 10 2|*=
1 4 1|*
> 2 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 205.8858
P(chi-square) = 4.462e-38

Total sequences searched: 2034

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: