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Classification of phyla is from NCBI page
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1 accessions found for Pyrococcus furiosus DSM 3638  

Data for AE009950  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE009950.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 12 0|==
-13 34 1|*====
-12 115 47|=====*=========
-11 253 244|==============================*=
-10 379 454|================================================ *
-9 415 468|==================================================== *
-8 320 351|======================================== *
-7 220 221|===========================*
-6 128 127|===============*
-5 69 69|========*
-4 45 37|====*=
-3 29 19|==*=
-2 19 10|=*=
-1 11 5|*=
0 3 2|*
1 5 1|*
2 2 0|=
3 2 0|=
4 0 0|
5 1 0|=
6 0 0|
7 0 0|
8 1 0|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 137.9390
P(chi-square) = 4.274e-24

Total sequences searched: 2065

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: