Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
4 projects found  

1 accessions found for Fusobacterium nucleatum subsp. nucleatum ATCC 25586  

Data for AE009951  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE009951.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE009951_1162 CDS_1240580-1241917 64.8 2.5e-18 1
AE009951_1836 CDS_1917236-1915953 53.6 3.8e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE009951_1162 1/1 226 292 .. 1 87 [] 64.8 2.5e-18
AE009951_1836 1/1 214 281 .. 1 87 [] 53.6 3.8e-15

Alignments of top-scoring domains:
AE009951_1162: domain 1 of 1, from 226 to 292: score 64.8, E = 2.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f +++sHELRTP+t+I++ +e +l+++ ++ +e +
AE009951_1 226 HEKQFSSDVSHELRTPITVISAQSEYALDYV-------ETIDEAK-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e+i r+a+ + +Lin++++ls++e +
AE009951_1 264 -----------ESFEVINRQAKKMTNLINQIMELSKMERQ 292

AE009951_1836: domain 1 of 1, from 214 to 281: score 53.6, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ n+sHEL+TP+ +I+gy+ +L + +++ + e +
AE009951_1 214 LQIDFVNNASHELKTPIFVIKGYVNMLND--------WGKDDKEVL- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l ++++e++ +++L + lL l++ ++
AE009951_1 252 ----------DESLIVLKKEIQNMQELTEKLLFLAKSRNL 281


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 13 0|==
-13 44 1|*======
-12 129 47|======*============
-11 233 245|==================================*
-10 374 454|====================================================== *
-9 401 469|==========================================================*
-8 315 351|============================================= *
-7 217 221|===============================*
-6 144 127|==================*==
-5 94 69|=========*====
-4 42 37|=====*
-3 23 19|==*=
-2 10 10|=*
-1 6 5|*
0 7 2|*
1 7 1|*
2 2 0|=
3 0 0|
> 4 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 181.7821
P(chi-square) = 4.393e-33

Total sequences searched: 2067

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: