Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
4 projects found  

1 accessions found for Fusobacterium nucleatum subsp. nucleatum ATCC 25586  

Data for AE009951  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE009951.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE009951_0670 CDS_714844-716232 121.3 1.3e-34 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE009951_0670 1/1 272 357 .. 1 94 [] 121.3 1.3e-34

Alignments of top-scoring domains:
AE009951_0670: domain 1 of 1, from 272 to 357: score 121.3, E = 1.3e-34
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ+++SLLr+Q r++k+ e+ +++L E++nR+lS
AE009951_0 272 EIHHRVKNNLQTVASLLRIQKRRVKNAET-----KKILDETINRILS 313

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+ + ++dt+ ++ le L+ n f+ ++s++i+++ +
AE009951_0 314 IAITHEILSAT-GMDTISIKHILEILCQNYFKNNVDKSKKIEFN--I 357


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 11 0|==
-13 13 12|=*
-12 59 135|======== *
-11 378 378|===============================================*
-10 364 489|============================================== *
-9 430 413|===================================================*==
-8 294 277|==================================*==
-7 186 164|====================*===
-6 181 91|===========*===========
-5 69 49|======*==
-4 34 26|===*=
-3 23 13|=*=
-2 13 7|*=
-1 7 3|*
> 0 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 188.0592
P(chi-square) = 2.215e-34

Total sequences searched: 2067

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: