Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

2 accessions found for Leptospira interrogans serovar Lai str. 56601  

Data for AE010300  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AE010300.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE010300_3865 CDS_3828548-3829609 45.1 5.8e-13 1
AE010300_0815 CDS_820229-818394 40.8 1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE010300_3865 1/1 149 212 .. 1 70 [] 45.1 5.8e-13
AE010300_0815 1/1 423 482 .. 1 70 [] 40.8 1e-11

Alignments of top-scoring domains:
AE010300_3865: domain 1 of 1, from 149 to 212: score 45.1, E = 5.8e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER R++ ELHD+vgQ++ a+kl ++ ++p +++d+
AE010300_3 149 ERIRLSGELHDGVGQTILAAKLNFQAY------NRNPKVYGAQFDTG 189

relarealaevRrllgdLRpaal<-*
l+++a +e+R++ ++L+p++l
AE010300_3 190 LLLIDKASQELRDIYTNLHPSTL 212

AE010300_0815: domain 1 of 1, from 423 to 482: score 40.8, E = 1e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA ++HDs+g L+ai le + + +l+ +
AE010300_0 423 ERERIASDIHDSIGSELTAILFELESKD----------KNDPTLKKL 459

relarealaevRrllgdLRpaal<-*
++ +++ ++ vR+++ +++++
AE010300_0 460 KTEVSHLISNVRDIVFLMHHQGN 482


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 1 0|=
-15 10 0|=
-14 332 0|========================
-13 378 0|===========================
-12 341 48|===*=====================
-11 382 399|============================*
-10 797 926|========================================================= *
-9 811 1052|==========================================================*
-8 498 811|==================================== *
-7 344 509|========================= *
-6 183 288|============== *
-5 140 154|==========*
-4 72 80|=====*
-3 32 41|==*
-2 19 21|=*
-1 4 10|*
0 8 5|*
1 2 2|*
2 0 1|*
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2049.2239
P(chi-square) = 0

Total sequences searched: 4358

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: