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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Xanthomonas oryzae pv. oryzae KACC10331  

Data for AE013598  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE013598.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE013598_2814 CDS_3082507-3080330 94.0 2.9e-26 1
AE013598_2740 CDS_2969880-2974088 91.9 1.2e-25 1
AE013598_1803 CDS_1923691-1927428 85.0 1.1e-23 1
AE013598_1802 CDS_1919943-1923575 84.1 1.9e-23 1
AE013598_0507 CDS_542227-539918 83.9 2.1e-23 1
AE013598_3597 CDS_3922833-3924176 81.0 1.4e-22 1
AE013598_1192 CDS_1233549-1232197 76.6 2.5e-21 1
AE013598_2283 CDS_2459037-2462489 67.0 1.3e-18 1
AE013598_1567 CDS_1634608-1632680 66.8 1.5e-18 1
AE013598_0687 CDS_718310-720346 64.5 6.7e-18 1
AE013598_3760 CDS_4103042-4100382 63.7 1.1e-17 1
AE013598_0324 CDS_345365-349018 63.6 1.2e-17 1
AE013598_3685 CDS_4014679-4013348 55.8 2.1e-15 1
AE013598_4387 CDS_4782468-4781413 54.9 3.6e-15 1
AE013598_1097 CDS_1142199-1139554 54.1 6.2e-15 1
AE013598_1531 CDS_1591305-1590112 52.0 2.5e-14 1
AE013598_1088 CDS_1131050-1132492 51.8 2.7e-14 1
AE013598_1175 CDS_1217133-1218515 51.4 3.5e-14 1
AE013598_3845 CDS_4203448-4201589 48.1 3e-13 1
AE013598_3464 CDS_3802831-3801503 47.7 3.9e-13 1
AE013598_2338 CDS_2527897-2529114 42.7 1e-11 1
AE013598_4111 CDS_4477262-4478704 41.5 2.2e-11 1
AE013598_1806 CDS_1931162-1932235 39.4 9e-11 1
AE013598_0697 CDS_730427-729174 38.0 2.3e-10 1
AE013598_0234 CDS_253508-252132 33.5 4.1e-09 1
AE013598_3790 CDS_4133176-4134675 28.6 1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE013598_2814 1/1 188 253 .. 1 87 [] 94.0 2.9e-26
AE013598_2740 1/1 681 746 .. 1 87 [] 91.9 1.2e-25
AE013598_1803 1/1 867 932 .. 1 87 [] 85.0 1.1e-23
AE013598_1802 1/1 829 894 .. 1 87 [] 84.1 1.9e-23
AE013598_0507 1/1 110 175 .. 1 87 [] 83.9 2.1e-23
AE013598_3597 1/1 214 278 .. 1 87 [] 81.0 1.4e-22
AE013598_1192 1/1 241 307 .. 1 87 [] 76.6 2.5e-21
AE013598_2283 1/1 765 831 .. 1 87 [] 67.0 1.3e-18
AE013598_1567 1/1 420 486 .. 1 87 [] 66.8 1.5e-18
AE013598_0687 1/1 298 364 .. 1 87 [] 64.5 6.7e-18
AE013598_3760 1/1 652 720 .. 1 87 [] 63.7 1.1e-17
AE013598_0324 1/1 851 917 .. 1 87 [] 63.6 1.2e-17
AE013598_3685 1/1 233 299 .. 1 87 [] 55.8 2.1e-15
AE013598_4387 1/1 122 181 .. 1 79 [. 54.9 3.6e-15
AE013598_1097 1/1 516 581 .. 1 87 [] 54.1 6.2e-15
AE013598_1531 1/1 176 240 .. 1 87 [] 52.0 2.5e-14
AE013598_1088 1/1 261 326 .. 1 87 [] 51.8 2.7e-14
AE013598_1175 1/1 241 306 .. 1 87 [] 51.4 3.5e-14
AE013598_3845 1/1 384 452 .. 1 87 [] 48.1 3e-13
AE013598_3464 1/1 224 290 .. 1 87 [] 47.7 3.9e-13
AE013598_2338 1/1 178 248 .. 1 87 [] 42.7 1e-11
AE013598_4111 1/1 268 334 .. 1 87 [] 41.5 2.2e-11
AE013598_1806 1/1 6 51 .. 21 87 .] 39.4 9e-11
AE013598_0697 1/1 321 367 .. 1 68 [. 38.0 2.3e-10
AE013598_0234 1/1 226 291 .. 1 87 [] 33.5 4.1e-09
AE013598_3790 1/1 292 349 .. 1 87 [] 28.6 1e-07

Alignments of top-scoring domains:
AE013598_2814: domain 1 of 1, from 188 to 253: score 94.0, E = 2.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l+ eq
AE013598_2 188 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDVEQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ti+ +a++ll+L++++Ld+s ieag
AE013598_2 224 ----------KECLNTIQASARSLLSLVEEVLDISAIEAG 253

AE013598_2740: domain 1 of 1, from 681 to 746: score 91.9, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++ lL++ +el+
AE013598_2 681 SKSDFLANMSHEIRTPMNAILGMLYLLQR---------SELPGAA-- 716

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a+ ll++ind+Ld+s+ieag
AE013598_2 717 ----------QDMVAKIDRSARTLLEIINDILDFSKIEAG 746

AE013598_1803: domain 1 of 1, from 867 to 932: score 85.0, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla+l HE RTP+t+++g++elLl+ t+l+++q
AE013598_1 867 AKSHFLATLGHEVRTPMTGVLGMSELLLA---------TPLNAKQ-- 902

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i++++ +llrL+nd Ldl+rieag
AE013598_1 903 ----------RSHVDAIRNAGTHLLRLVNDALDLARIEAG 932

AE013598_1802: domain 1 of 1, from 829 to 894: score 84.1, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl t+l+ q
AE013598_1 829 AKTRFLATLGHEVRTPMTGVLGMSELLLQ---------TPLDGRQ-- 864

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i+ ++++llrL+nd Ldl+rieag
AE013598_1 865 ----------QGYASAIQLAGKHLLRLVNDALDLARIEAG 894

AE013598_0507: domain 1 of 1, from 110 to 175: score 83.9, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+ ++el+ + ls +q
AE013598_0 110 AKGEFLATMSHEIRTPLNGIIPMLELISS---------GQLSLDQ-- 145

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+ +++ +llr+++d+Ld+s++ea+
AE013598_0 146 ----------RDMLQTATSSSLQLLRIVDDILDYSKLEAN 175

AE013598_3597: domain 1 of 1, from 214 to 278: score 81.0, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+++L ++ +e
AE013598_3 214 VRRDFVANVSHELRTPLTVVHGYLDMLDP---------EDFPESG-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++++r+ +L++dlL+lsr+e++
AE013598_3 250 -----------PMLAEMRKQSQRMAQLVEDLLTLSRLESQ 278

AE013598_1192: domain 1 of 1, from 241 to 307: score 76.6, E = 2.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ +++l+e+
AE013598_1 241 RDREFNADVSHELRTPLAVIRGATELLLT--------RPNLDEKV-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ +++++Li lL lsr e g
AE013598_1 278 ----------LQRLQRIQRAEQQCSDLIGSLLLLSRNERG 307

AE013598_2283: domain 1 of 1, from 765 to 831: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g + l++ e++e+++l
AE013598_2 765 VKDEFLATLSHELRTPLNAILGWSRLMQS----------EMTEPTHL 801

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l +i+r+a+ ++i+dlLd+s i +g
AE013598_2 802 GRG----------LVIIERSARAQTQIIDDLLDMSAILSG 831

AE013598_1567: domain 1 of 1, from 420 to 486: score 66.8, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PLtaI +++lL+e +++ ++ +
AE013598_1 420 AMGRFSASLAHEIRNPLTAICYASQLLEE--------SPDIGDAD-- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+++ +r + +++ +L l+r e
AE013598_1 457 ----------RRLLQIIHQQCQRTNGIVESVLALARRERA 486

AE013598_0687: domain 1 of 1, from 298 to 364: score 64.5, E = 6.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPLt+I+g +elLl +++ +++ + +
AE013598_0 298 LKDEFLATLSHELRTPLTTILGWSELLLQRVE-----EGHTTYKG-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
AE013598_0 338 -------------LSVIASSARAQKRLISDMLDLSSMLLG 364

AE013598_3760: domain 1 of 1, from 652 to 720: score 63.7, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g a+ L ++ +++++ +r
AE013598_3 652 LRSALLSSVSHDLRSPLASMIGSASSLASYG-------DAMDAHDR- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti+ e+erl+r i++lLd++r+++
AE013598_3 691 ----------HSLLDTIQLEGERLDRYIQNLLDMTRLGHT 720

AE013598_0324: domain 1 of 1, from 851 to 917: score 63.6, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a r++a++L+e ++++ e++
AE013598_0 851 SKTRFLAAISHDVLQPLNAARLFASALRE---------SHQNNEEQ- 887

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ +++ ++L++ lLd sr++ag
AE013598_0 888 ----------RHLAERVDASLRAAEELLDGLLDVSRLDAG 917

AE013598_3685: domain 1 of 1, from 233 to 299: score 55.8, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+Ir +++++l+ d+els +
AE013598_3 233 RERNFTRDASHELRTPLTVIRVASDMALA--------DDELSTRT-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r+++ +++ i+ +L l+r +
AE013598_3 270 ----------QRSLRRIQRAGHEMEAVIDAFLILAREAEV 299

AE013598_4387: domain 1 of 1, from 122 to 181: score 54.9, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s l +l+HELR+PL++++g+a+lL +++ + ++e++
AE013598_4 122 ALSAALKGLAHELRNPLAGLKGAAQLLARRS-------AGRDEDE-- 159

peLRledpeyreyletilreaerllrLindlL<-*
re+le i e+erl+ L+++lL
AE013598_4 160 ----------RELLELIGTEIERLNTLLERLL 181

AE013598_1097: domain 1 of 1, from 516 to 581: score 54.1, E = 6.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++++L+ + ++
AE013598_1 516 YKTRFVASAVHDLLQPLNAARMFVSVLRG---------QVHDAGS-- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ ++ ++++n lLd+sr+eag
AE013598_1 552 ----------ARVVDNIDGALAAQDAILNSLLDISRLEAG 581

AE013598_1531: domain 1 of 1, from 176 to 240: score 52.0, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+l+HELRTPL+a +g ++ +l+e++ ++ +eq
AE013598_1 176 ELRDSSAMLAHELRTPLNAAMGRVQGMLDEVF-------PREPEQ-- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r++e+++rLi dl s ++ag
AE013598_1 214 -------------LRLVHRQLEQINRLIGDLHLVSLARAG 240

AE013598_1088: domain 1 of 1, from 261 to 326: score 51.8, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a ++H++RTPL+a+r+ a+l+ + + ++ ++
AE013598_1 261 TLRAFMAEAAHQMRTPLAALRAQAQLAMD----------DDDPREM- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+r a +++rL+n+lL + +
AE013598_1 297 ----------QRSLVAIERNASHMSRLLNQLLSDASVTHR 326

AE013598_1175: domain 1 of 1, from 241 to 306: score 51.4, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTP++a++ +a L+ ++++e+r
AE013598_1 241 RERRFIADAAHELRTPIAALKVHAANLRL----------AANAEER- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++ + r++r+i +lL lsr ea
AE013598_1 277 ----------DESQQQLDANVLRIERMIAQLLALSRVEAV 306

AE013598_3845: domain 1 of 1, from 384 to 452: score 48.1, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL + g+++ L + + +++ +e+
AE013598_3 384 ELEAFSYSVSHDLRAPLRHVAGFSDKLAR-------HLGDAADEKS- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+i ++a+r+ +Li+dlL +sr++ g
AE013598_3 423 ----------RHYMEVISSSARRMASLIDDLLVYSRLGRG 452

AE013598_3464: domain 1 of 1, from 224 to 290: score 47.7, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTP+++I ++el+l+ ++ +++ +
AE013598_3 224 RERAFIDSASHELRTPIAVIGNAVELALD---------QPGTPPAV- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + + + ++Li lL l++
AE013598_3 261 ----------RHQLQRIAQTSASVEQLITLLLVLAKDPGR 290

AE013598_2338: domain 1 of 1, from 178 to 248: score 42.7, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL+aI + +++++l ++ ++ ++
AE013598_2 178 SMGGLAASIAHEVNQPLAAIVTSGNACQRWL--------AQQPPNLA 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +le++l +a r +++i +++ l+r ea
AE013598_2 217 KA--------DAALERMLADAGRASAIIARMRALARGEAS 248

AE013598_4111: domain 1 of 1, from 268 to 334: score 41.5, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+P++++r+++e + + ++++++
AE013598_4 268 ALGRMTATVAHEIRNPIATMRLALENEIA--------RRDATPDD-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l +++rl+ ++ lL + +
AE013598_4 305 ----------AAHGELMLGQIRRLDGVVESLLGMVQPIRL 334

AE013598_1806: domain 1 of 1, from 6 to 51: score 39.4, E = 9e-11
*->rgyaelLleeldkvlagdtelseeqrlpeLRledpeyreyletilre
+g++elLl+ t l+ q r y+e+i+r+
AE013598_1 6 LGMSELLLK---------TSLDITQ------------RSYTESIRRA 31

aerllrLindlLdlsrieag<-*
+ +llrL+nd Ldl+rie+g
AE013598_1 32 GAHLLRLVNDALDLARIESG 51

AE013598_0697: domain 1 of 1, from 321 to 367: score 38.0, E = 2.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+++++H+LRTPL+a++ a+l+ + + ++++q
AE013598_0 321 AQNRFISTMRHQLRTPLNALINCAQLIDT---------EQMPAQQ-- 356

peLRledpeyreyletilrea<-*
re+l+ + +a
AE013598_0 357 ----------RELLQAVTVSA 367

AE013598_0234: domain 1 of 1, from 226 to 291: score 33.5, E = 4.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ l+H+LR+PL ++ + +++L + l+
AE013598_0 226 LREEFIGILAHDLRNPLQSMHAVVDVLSI---------DQLNQHY-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++r+++r+++Li+ d++r +
AE013598_0 262 ----------GGSIRSMQRSLRRMEELIDFACDFARGIER 291

AE013598_3790: domain 1 of 1, from 292 to 349: score 28.6, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H+LRTPL+ +++ ++ L+
AE013598_3 292 ERTHMVAAIAHDLRTPLARLSFRLDGLQP------------------ 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l +++ + ++i+ L + ++
AE013598_3 321 -----------PLRDKALADIDEMKAMISAALHFIHNDSH 349


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 18 0|==
-13 67 3|*====
-12 242 103|======*==========
-11 442 537|============================== *
-10 720 997|================================================ *
-9 869 1030|==========================================================*
-8 779 771|===================================================*
-7 597 486|================================*=======
-6 319 279|==================*===
-5 207 153|==========*===
-4 112 82|=====*==
-3 53 43|==*=
-2 44 22|=*=
-1 15 11|*
0 8 6|*
1 6 3|*
> 2 40 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 387.6822
P(chi-square) = 0

Total sequences searched: 4538

Whole sequence top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: