Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Tropheryma whipplei str. Twist  

Data for AE014184  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE014184.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE014184_0046 CDS_46218-44764 66.6 3.2e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE014184_0046 1/1 249 316 .. 1 87 [] 66.6 3.2e-19

Alignments of top-scoring domains:
AE014184_0046: domain 1 of 1, from 249 to 316: score 66.6, E = 3.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fla++sHELRTPL ++rgyael + ++l ++
AE014184_0 249 EMKQFLADASHELRTPLVSLRGYAELYRI---------GALKGKE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i++ea r+ +++dlL l+r+e
AE014184_0 285 --------DIDNAIERIEKEAIRMGTMVEDLLSLTRLEKA 316


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 4 0|==
-13 20 0|=======
-12 57 18|=====*=============
-11 86 95|============================= *
-10 129 177|=========================================== *
-9 163 183|======================================================= *
-8 134 137|=============================================*
-7 84 86|============================*
-6 56 49|================*==
-5 34 27|========*===
-4 13 14|====*
-3 13 7|==*==
-2 8 4|=*=
-1 4 2|*=
> 0 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 103.3558
P(chi-square) = 3.291e-18

Total sequences searched: 808

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: