hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AE014184.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE014184_0632 CDS_746818-745304 113.9 6.2e-33 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE014184_0632 1/1 294 379 .. 1 94 [] 113.9 6.2e-33
Alignments of top-scoring domains:
AE014184_0632: domain 1 of 1, from 294 to 379: score 113.9, E = 6.2e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHR+KN+LQ+++S+LrLQ+r++++e v ++ + ++++R+l
AE014184_0 294 EIHHRIKNSLQTVASILRLQSRRSDSEIV-----RAEFADAVRRILG 335
mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
++ +H+ L++ + ++++f++++ kL++ ++++++++++gi+L+ +
AE014184_0 336 VSEVHDALSRDLS-ENLNFDDFFPKLVKLIISLAELDKNGIDLR--I 379
Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 9 0|===
-13 10 5|=*==
-12 51 53|=================*
-11 174 147|================================================*=========
-10 153 191|=================================================== *
-9 154 161|==================================================== *
-8 109 108|===================================*=
-7 59 64|==================== *
-6 41 35|===========*==
-5 26 19|======*==
-4 11 10|===*
-3 5 5|=*
-2 2 2|*
-1 1 1|*
> 0 2 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 21.1460
P(chi-square) = 0.0201
Total sequences searched: 808
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
