Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Brucella suis 1330  

Data for AE014291  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: AE014291.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE014291_1604 CDS_1605051-1604116 146.9 3.6e-50 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE014291_1604 1/1 118 200 .. 1 85 [] 146.9 3.6e-50

Alignments of top-scoring domains:
AE014291_1604: domain 1 of 1, from 118 to 200: score 146.9, E = 3.6e-50
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
E++HR+KN+LA+VQSia+QT+R+++s+d+f+ +F+gR+q+Ls ++dL
AE014291_1 118 EVSHRSKNLLAIVQSIATQTARFTDSIDDFLVKFRGRIQSLSYSQDL 164

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
+t+s+W+gA + +L++++++ y + d+eR+t++G++
AE014291_1 165 --VTDSNWRGALFLDLVRSQVEKYIDIDDERLTIEGDN 200


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 35 0|=====
-13 80 0|============
-12 253 0|=====================================
-11 245 17|==*================================
-10 317 219|===============================*==============
-9 319 543|============================================== *
-8 370 564|===================================================== *
-7 215 378|=============================== *
-6 101 206|=============== *
-5 77 102|=========== *
-4 50 48|======*=
-3 25 22|===*
-2 16 10|=*=
-1 9 4|*=
0 2 2|*
1 1 0|=
2 1 0|=
3 1 0|=
4 0 0|
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 3324.5671
P(chi-square) = 0

Total sequences searched: 2123

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: