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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

2 accessions found for Bifidobacterium longum NCC2705  

Data for AE014295  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AE014295.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AE014295_0006 CDS_4315-6165 78.6 2.6e-22 1
AE014295_0645 CDS_821290-822366 70.3 5.9e-20 1
AE014295_0031 CDS_38212-39909 65.4 1.4e-18 1
AE014295_0965 CDS_1244199-1242868 45.7 5.5e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AE014295_0006 1/1 300 369 .. 1 87 [] 78.6 2.6e-22
AE014295_0645 1/1 132 196 .. 1 87 [] 70.3 5.9e-20
AE014295_0031 1/1 289 356 .. 1 87 [] 65.4 1.4e-18
AE014295_0965 1/1 179 245 .. 1 87 [] 45.7 5.5e-13

Alignments of top-scoring domains:
AE014295_0006: domain 1 of 1, from 300 to 369: score 78.6, E = 2.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPL+aI gyael ++ ++d + e +
AE014295_0 300 KMKRFVSDASHELRTPLAAIHGYAELYKM------QRDMPGALERA- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e i+r+++r+ L++dlL l+r+++g
AE014295_0 340 ----------DESIEHIERSSQRMTVLVEDLLSLARLDEG 369

AE014295_0645: domain 1 of 1, from 132 to 196: score 70.3, E = 5.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTP++a+++++e + +++ te ++
AE014295_0 132 MRRDMIANVSHELRTPVSALQAMVENMADGV-------TEPTPTN-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+il +++rl++Li lLdlsr+eag
AE014295_0 170 -------------LESILTQTQRLSDLIAFLLDLSRMEAG 196

AE014295_0031: domain 1 of 1, from 289 to 356: score 65.4, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTP+t++r++++lL++ + + ++ +
AE014295_0 289 FQKRFVSDVSHELRTPVTTMRMASDLLEM-------KKDGFDPST-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + ++ r ++++ dlL++sr +ag
AE014295_0 327 ----------KRTVELLAGQISRFQDMLADLLEISRYDAG 356

AE014295_0965: domain 1 of 1, from 179 to 245: score 45.7, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP aI ++ae+ + ++ +++ +
AE014295_0 179 VRRDFVTNVSHELKTPAGAIALLAETVTD---------AADDPDAV- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +i +e+ rl +L+ l dl +++++
AE014295_0 216 ----------RYFSGRISKESARLTELVHHLIDLQKAQSP 245


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 4 0|=
-13 16 1|*==
-12 61 39|======*====
-11 176 204|============================== *
-10 299 379|================================================== *
-9 336 392|======================================================== *
-8 292 293|================================================*
-7 228 185|==============================*=======
-6 138 106|=================*=====
-5 77 58|=========*===
-4 44 31|=====*==
-3 19 16|==*=
-2 17 8|=*=
-1 9 4|*=
0 1 2|*
1 2 1|*
2 1 0|=
3 1 0|=
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 79.7799
P(chi-square) = 5.545e-13

Total sequences searched: 1727

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: